PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542507.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 214aa    MW: 24343.1 Da    PI: 10.9148
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542507.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.8e-2121114191
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        ffkvl     + ++rl +p +f++++        +g ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +fvvF++
  KN542507.1_FGP001  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRY 107
                        56666..3444.457********888******996666799*****************..******************************** PP

                        -SSSEE. CS
                 B3  85 dgrsefe 91 
                        dg+++f+
  KN542507.1_FGP001 108 DGNTRFT 114
                        *998885 PP
2B350.14.8e-161161911698
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++p  f ++h   ++e ++++l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l    ef  +v++fr
  KN542507.1_FGP001 116 MRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELAAAAEF--RVHIFR 191
                        678999999995..345679***************4.444455..9**********************9876666..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2016114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1916116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.1481899IPR003340B3 DNA binding domain
CDDcd100172.51E-1619114No hitNo description
SMARTSM010191.8E-1021115IPR003340B3 DNA binding domain
PfamPF023621.1E-1821114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.69101193IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-20115191IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-20116191IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-4116193IPR003340B3 DNA binding domain
CDDcd100171.36E-19116191No hitNo description
PfamPF023622.4E-14116191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMRFPT  120
GFSRQHLPRE RTDVVLRDPG GKVWSVLYIP NTRDRLSRGW CAFARGNCLE EGDYCVFELA  180
AAAEFRVHIF RVVEPAVPAV RLRRVTVTCG RGPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542507.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032291e-158AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149571e-158AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-158CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.12e-77B3 domain-containing protein Os01g0723500
SwissprotQ8S2E62e-78Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0D3ETI01e-145A0A0D3ETI0_9ORYZ; Uncharacterized protein
STRINGOBART01G29350.11e-146(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.11e-11B3 family protein