PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542538.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 181aa MW: 20409.6 Da PI: 10.1863

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542538.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.8	2.2e-18	144	181	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkk KN542538.1_FGP001 144 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKK 181 58*************************99****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.0E-18	137	181	IPR003657	WRKY domain
PROSITE profile	PS50811	17.121	139	181	IPR003657	WRKY domain
SuperFamily	SSF118290	1.29E-15	140	181	IPR003657	WRKY domain
SMART	SM00774	3.4E-8	144	181	IPR003657	WRKY domain
Pfam	PF03106	3.4E-14	145	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAKMLPPPSR SVSSRPPSWL YIPPPRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIRFM 60 DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SVKKDHEVEA LEAELRRASE 120 ENKKLTEMLR AVVAKYTELQ GQVVKDGYQW RKYGQKVTKD NPCPRAYFRC SFAPACPVKK 180 K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:21961049, ECO:0000269\|PubMed:23462973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542538.1_FGP001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:23462973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106282	1e-178	AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641578.1	4e-80	WRKY transcription factor WRKY28-like
Swissprot	Q0DAJ3	2e-83	WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBL	A0A0D3GJA7	2e-84	A0A0D3GJA7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0ACL0	3e-83	A0A0E0ACL0_9ORYZ; Uncharacterized protein
STRING	OGLUM06G24120.1	5e-84	(Oryza glumipatula)
STRING	OBART06G22880.1	3e-85	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31800.1	1e-21	WRKY DNA-binding protein 18

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Berri S, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] Delteil A, et al. Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]