PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542820.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 49aa MW: 5537.24 Da PI: 4.3242

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542820.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.9	2.5e-12	1	42	46	87
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q KN542820.1_FGP001 1 MRELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQA 42 578999*********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.5E-10	2	42	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 49 aa Download sequence Send to blast
MRELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QAISGPPLQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542820.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR855110	3e-57	CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963862.1	3e-16	LOB domain-containing protein 12
TrEMBL	A0A0D3FVH1	7e-21	A0A0D3FVH1_9ORYZ; Uncharacterized protein
STRING	OBART04G11480.1	1e-21	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-15	LBD family protein