PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542878.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 249aa    MW: 27858.1 Da    PI: 9.7042
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542878.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.9e-24142234186
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85 
                        ++k+++++++l++g+++lp  f++++g+++e+++tl++++++g     rsWev ++++k++ +   +l +GWk+F++angL +gD+++F+++
  KN542878.1_FGP002 142 WIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINNSRGsssgsRSWEVACSVNKNGYGccNLLPSGWKRFCQANGLLVGDVCTFSVV 233
                        789****************************************************99666666779***********************964 PP

                        S CS
                 B3  86 g 86 
                        +
  KN542878.1_FGP002 234 E 234
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.66162IPR003340B3 DNA binding domain
CDDcd100175.42E-8459No hitNo description
SuperFamilySSF1019361.06E-11464IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-10664IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-15137244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-17138244IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-22142244IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561142246IPR003340B3 DNA binding domain
SMARTSM010191.1E-6143246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MASILSPLGK FWRIELEKDE LGMFFKGGWL QFLSFHGISP GDVVLLRHEG NLVFKIKVFG  60
INGCKKDLKT KDDITIQQSA RNQHETPSFS TRKCNKNSRF GEDCKNQLQE IPCSIKGSRK  120
KGRETKRPKK SKSIYEIGPP SWIKKEISNY MLENGNISLP GIFCKSIGLV EETTITLMIN  180
NSRGSSSGSR SWEVACSVNK NGYGCCNLLP SGWKRFCQAN GLLVGDVCTF SVVEATLWHV  240
AIDRAVERS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119128KKGRETKRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542878.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-130AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-130AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-130CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880727.11e-161LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS741e-170Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLB8ASH11e-167B8ASH1_ORYSI; Uncharacterized protein
STRINGORUFI04G09430.11e-168(Oryza rufipogon)
STRINGONIVA04G06710.11e-168(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-09B3 family protein