PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543108.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 227aa    MW: 24846.5 Da    PI: 4.1704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543108.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-133461156
                AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       + grW AeIrd s +g   r+++g++ tae Aa+a++a +++++g+
  KN543108.1_FGP001  3 SYGRWSAEIRDSSYRG--HRVWIGTYATAEAAARAYDAEARRIHGA 46
                       68*********65555..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.82153IPR001471AP2/ERF domain
SMARTSM003803.0E-20159IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-16253IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-22253IPR001471AP2/ERF domain
PfamPF008472.6E-6545IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRSYGRWSAE IRDSSYRGHR VWIGTYATAE AAARAYDAEA RRIHGAKANT NFPPPPNDVD  60
SDAPPPPPWD LEAHMRFLGE VELDDGGAEP PPPPSYGIPE LLHMEPELAS ATQSVHGDDE  120
PWGLDKYMRF LSEVELDDGG AEPPPPPSYG IPELLHMEPE LASATQSVHG DDEPWGLDKY  180
MRFLSEVELD DGGAPLPPPP SQHGGVAAAG SPQYGCRYDY LLLMMCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543108.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104820.0AB510482.1 Oryza rufipogon Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0120.
GenBankAB5104840.0AB510484.1 Oryza nivara Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0106.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC6L7X83e-86C6L7X8_ORYRU; Ethylene response factor
STRINGONIVA12G16890.18e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3124944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.12e-07ethylene responsive element binding factor 6