PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543670.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 156aa    MW: 16355.6 Da    PI: 8.4925
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543670.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.4e-3964154191
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +CaaCkvlrr+Ca++Cvlapyfp ++p kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq++ ++lk
  KN543670.1_FGP001  64 PCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKEANELK 154
                        7************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.29263156IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3964154IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDHAGNTVAN VTVAQQPHYG RSVSPPSRVS SCSPPPPPVG TASSLLVGNT SSSSSPTTTV  60
VLSPCAACKV LRRRCADGCV LAPYFPPTEP TKFTTAHRVF GASNIIKLLQ ELPESARADA  120
VSSMVYEAEA RLRDPVYGCA GAVCRLQKEA NELKGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41541541101LOB family transfactor Ramosa2.1
5ly0_B4e-41541541101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543670.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725150.0AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629326.11e-82LOB domain-containing protein 1
SwissprotQ9LQR05e-54LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK082e-53LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA2XFE01e-84A2XFE0_ORYSI; Uncharacterized protein
STRINGOGLUM03G13350.15e-82(Oryza glumipatula)
STRINGOS03T0287400-015e-82(Oryza sativa)
STRINGONIVA03G14510.15e-82(Oryza nivara)
STRINGORGLA03G0128100.15e-82(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-53LOB domain-containing protein 1