PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543694.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 203aa    MW: 21727.7 Da    PI: 10.3183
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543694.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.5e-17111148136
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                        C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  KN543694.1_FGP001 111 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 148
                        *****88888*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.3843678IPR010402CCT domain
PfamPF062032.6E-163678IPR010402CCT domain
SMARTSM004012.2E-12105158IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.249105153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-12109161No hitNo description
Gene3DG3DSA:3.30.50.106.0E-16110151IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.99E-14110154No hitNo description
PROSITE patternPS003440111138IPR000679Zinc finger, GATA-type
PfamPF003206.0E-15111148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
VQAVLLLLGG RELAPGSGSV PSSSAAYSKK MNFPHRMASL MRFREKRKER NFDKKIRYTV  60
RKEVALRMQR NRGQFTSSKS KAEEATSAIT SLEGSPNWGA VEGRPPSAAE CHHCGISAAS  120
TPMMRRGPDG PRTLCNACGL MWANKGTMRE VTKGPPVPLQ IVPAATNDVQ NGIVEATGVE  180
QHNSAVEEAV SAANGHESQS GVA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543694.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.11e-147GATA transcription factor 17 isoform X1
SwissprotQ6Z4331e-148GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0E0CFL91e-146A0A0E0CFL9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G1751e-146A0A0E0G175_ORYNI; Uncharacterized protein
TrEMBLA2X0W91e-147A2X0W9_ORYSI; Uncharacterized protein
TrEMBLI1NX941e-146I1NX94_ORYGL; Uncharacterized protein
STRINGOMERI02G04600.11e-147(Oryza meridionalis)
STRINGONIVA02G03810.11e-147(Oryza nivara)
STRINGORGLA02G0035000.11e-147(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-54ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]