PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543721.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 211aa    MW: 23373 Da    PI: 6.6478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543721.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.93.5e-1244941359
                       E--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
               WRKY 13 KevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                       K+ k+ e p  YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  KN543721.1_FGP001 44 KKEKEMEIPLFYYRCTYKndmKCPATKQVQQKdTNDPPMFSVTYFNHHTCN 94
                       7779999**********99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-114495IPR003657WRKY domain
SuperFamilySSF1182905.1E-114495IPR003657WRKY domain
PfamPF031061.3E-134493IPR003657WRKY domain
SMARTSM007745.8E-114495IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
PLGSPTYLVC SQELANSCGC FFLQKSTIIP HCHERQLEGD PKRKKEKEME IPLFYYRCTY  60
KNDMKCPATK QVQQKDTNDP PMFSVTYFNH HTCNSSKIVG STPDTAAQSS SRRAISICFN  120
SHGTTSEQPT FLSSSASLLS PSMQSYSSNQ QPDMNTYSRQ FQWADTSSST SNAPVKMEAD  180
DYAEASASPS TTGALSRTLL PIDSSQIFVL E
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543721.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAK0732430.0AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8320180.0CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.
GenBankCU4058750.0CU405875.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005J02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616443.13e-88probable WRKY transcription factor 70 isoform X2
TrEMBLA0A0E0F1X12e-90A0A0E0F1X1_9ORYZ; Uncharacterized protein
STRINGOMERI11G01510.17e-93(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-09WRKY family protein