PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN543736.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 70aa    MW: 7683.57 Da    PI: 5.3595
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN543736.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind73.44.4e-231270260
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                       Fl+k+y++++d+ ++  +sws+++nsfvv+d++ fa  +Lp +Fkh nf+SF+RQLn+Y
  KN543736.1_FGP001 12 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTY 70
                       9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-24670IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-14870IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.26E-201070IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-141235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-191270IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-145062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-146370IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MEGLHDAGPP PFLTKTYDMV DDAGTDAAVS WSATSNSFVV WDPHAFAAGL LPLHFKHANF  60
SSFLRQLNTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A3e-16770265HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A3e-16770265HEAT-SHOCK TRANSCRIPTION FACTOR
2ldu_A3e-167701278Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN543736.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018242e-77AK101824.1 Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence.
GenBankAM4091862e-77AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene).
GenBankAP0038262e-77AP003826.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1361_E02.
GenBankAP0149632e-77AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3234882e-77AY323488.1 Oryza sativa (japonica cultivar-group) heat stress protein (HS1) mRNA, complete cds.
GenBankAY3444872e-77AY344487.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF5 mRNA, complete cds.
GenBankCP0126152e-77CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645272.14e-39heat stress transcription factor A-2b
SwissprotQ6VBB23e-40HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A0E0AGG47e-39A0A0E0AGG4_9ORYZ; Uncharacterized protein
STRINGOGLUM07G04480.11e-39(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-35heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]