PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN544572.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22517.2 Da    PI: 6.5424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN544572.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.82.1e-11542441
                       -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
             SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        n++ r+vt+ k  +g++KK  ELS+LC ++++++++ 
  KN544572.1_FGP001  5 TNNIVRKVTLRKCSAGLIKKVTELSILCSVKASIVVYN 42
                       68999*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0039153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.194142IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-13289IPR002100Transcription factor, MADS-box
PfamPF003196.9E-11552IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAKLTNNIVR KVTLRKCSAG LIKKVTELSI LCSVKASIVV YNIDETGDPV AWPSIEEAKD  60
MWSKLMDMPE AVQKKWMQDS KTLLQQQIMK LQKKLDNLKA ENYKREITNI ISELSAGLRK  120
NLDDLSPEMV KGVKLEVAKH REAIRNRIVE LRAQGASSSV VLAPQEEIVA PHAFQFDLNE  180
PAVVDDDPPI VREEVDLPCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN544572.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ME251e-118A0A0E0ME25_ORYPU; Uncharacterized protein
STRINGOPUNC11G07320.11e-119(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1651545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-13AGAMOUS-like 38