PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN544591.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 184aa    MW: 20035.1 Da    PI: 5.6149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN544591.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.14.9e-1669161498
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE.. CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefel 92 
                        v ++  v+ ++ l++p +f   h + ++e +t  + ++ g+sW   +  +++ ++  l +GW+eF+ +n+L +gD +vF+l+  g   + e+
  KN544591.1_FGP001  69 VIKQQRVTDLS-LWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELIamGAaGGLEF 155
                        55555666666.9******6..6666778889***************..*******************************774466677777 PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v+++r
  KN544591.1_FGP001 156 QVQILR 161
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1750161IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-1351161No hitNo description
SuperFamilySSF1019361.24E-1563161IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32365163IPR003340B3 DNA binding domain
SMARTSM010190.009466163IPR003340B3 DNA binding domain
PfamPF023621.1E-1369161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPASGSGEDW EATTPLAAGN PFFTVLIAKS  60
HLHPKFQMVI KQQRVTDLSL WIPPRFQHRL AEPEARTAAV LHSGGKSWAT SYCGHLKMKK  120
LDAGWSEFAV DNRLLVGDAC VFELIAMGAA GGLEFQVQIL RGGLPPEVVT SKGLTSDQPI  180
LIVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN544591.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069201e-167AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643738.11e-106B3 domain-containing protein Os06g0112300
RefseqXP_015643739.11e-106B3 domain-containing protein Os06g0112300
RefseqXP_025882046.11e-106B3 domain-containing protein Os06g0112300
SwissprotQ9LHY91e-107Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A0E0HJU61e-104A0A0E0HJU6_ORYNI; Uncharacterized protein
TrEMBLA2Y8H31e-104A2Y8H3_ORYSI; Uncharacterized protein
STRINGORUFI06G00790.11e-103(Oryza rufipogon)
STRINGOS06T0112300-011e-105(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.17e-08VERDANDI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]