PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN545330.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 78aa MW: 8840.17 Da PI: 10.7586

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN545330.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.6e-07	52	75	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L++l+P+ KN545330.1_FGP001 52 SIAERERRTRISKRLKKLQDLVPN 75 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.623	46	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-6	49	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-5	51	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-4	52	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MVSSFSNIDS QFGLSKQSSL EMAGMDDFLQ LQPDSVACRA RAKRGCATHP RSIAERERRT 60 RISKRLKKLQ DLVPNMDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN545330.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068254	1e-123	AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBank	AK105713	1e-123	AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
GenBank	HQ858859	1e-123	HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds.
GenBank	HQ858868	1e-123	HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613853.1	1e-48	transcription factor bHLH128
Swissprot	Q9ZW81	2e-27	BH129_ARATH; Transcription factor bHLH129
TrEMBL	B9EVE1	5e-49	B9EVE1_ORYSJ; Uncharacterized protein
TrEMBL	Q7F1Y1	1e-48	Q7F1Y1_ORYSJ; B1065G12.3 protein
STRING	OGLUM01G44860.1	5e-48	(Oryza glumipatula)
STRING	ORUFI01G44010.1	8e-49	(Oryza rufipogon)
STRING	ORGLA01G0346300.1	5e-48	(Oryza glaberrima)
STRING	OBART01G40680.1	5e-48	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.1	9e-30	bHLH family protein