PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN547851.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 65aa    MW: 6930.9 Da    PI: 11.1992
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN547851.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42e-073283055
                       HHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox 30 reeLAkklgLterqVkvWFqNrRake 55
                       +  LA+ +gL+++q+ +WF N+R ++
  KN547851.1_FGP001  3 KMTLAQTTGLDQKQINNWFINQRKRH 28
                       678********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.576131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-14232IPR009057Homeodomain-like
CDDcd000861.50E-8231No hitNo description
SuperFamilySSF466892.95E-10237IPR009057Homeodomain-like
PfamPF059209.9E-11227IPR008422Homeobox KN domain
PROSITE patternPS000270629IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MEKMTLAQTT GLDQKQINNW FINQRKRHWK PTPVAGTAFP TMEAAGGGFR HSGHGGGLAA  60
AAALP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN547851.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288841e-105AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAC1334501e-105AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAK1072961e-105AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
GenBankAP0149591e-105AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-105CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.11e-39homeobox protein knotted-1-like 8 isoform X1
RefseqXP_025879467.11e-39homeobox protein knotted-1-like 8 isoform X2
SwissprotQ10ED21e-40KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0D3FPL02e-38A0A0D3FPL0_9ORYZ; Uncharacterized protein
TrEMBLI1PFX52e-38I1PFX5_ORYGL; Uncharacterized protein
STRINGOMERI03G32190.12e-39(Oryza meridionalis)
STRINGORGLA03G0327100.14e-39(Oryza glaberrima)
STRINGOBART03G35680.13e-39(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-15KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]