PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ41798.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB_related
Protein Properties Length: 219aa    MW: 23232.8 Da    PI: 6.965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ41798.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.4e-164386146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     ++ W+++E+  lv a++ lG++ W+ Iar++g gR+++ +k++w++
       KXZ41798.1 43 KQTWSEQEEWALVAAHAALGNR-WADIARRVG-GRSENAVKNHWNT 86
                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.157135IPR017877Myb-like domain
SuperFamilySSF466895.74E-221793IPR009057Homeodomain-like
CDDcd001670.005211735No hitNo description
Gene3DG3DSA:1.10.10.609.9E-71837IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-173892IPR009057Homeodomain-like
PROSITE profilePS5129420.8053892IPR017930Myb domain
SMARTSM007175.0E-124290IPR001005SANT/Myb domain
PfamPF002496.2E-144386IPR001005SANT/Myb domain
CDDcd001671.58E-104586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVHIAGGGGG GAAAGEQLLG GRTPKQCRDR WMHYLKPDVI TTKQTWSEQE EWALVAAHAA  60
LGNRWADIAR RVGGRSENAV KNHWNTGLRR KLPTRYADMR ISVLDRYQAL RGFKKFPPPE  120
EAEVLAAATS GPPLPTPSGG DARAGGRRGG DGAQAGKKRK AESQNEQAQQ VPEQGPPQAD  180
GRGGAGDSLE AAEAAEDATA VSAGASEEEA EAYMMDFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21199437110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150FW521e-156A0A150FW52_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-24myb domain protein 98