PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ42308.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family ERF
Protein Properties Length: 405aa    MW: 40567.6 Da    PI: 6.8018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ42308.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20143193155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr+++ +g+++AeIrdp     +  r +lg+++taeeAa a+++a+++++g
  KXZ42308.1 143 TKYRGVRQRP-WGKYAAEIRDPH----KgCRLWLGTYDTAEEAALAYDKAAREIRG 193
                 69********.**********73....359************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-13143193IPR001471AP2/ERF domain
CDDcd000181.87E-31143202No hitNo description
SMARTSM003802.6E-38144207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-32144202IPR001471AP2/ERF domain
PROSITE profilePS5103223.42144201IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22144201IPR016177DNA-binding domain
PRINTSPR003672.9E-10145156IPR001471AP2/ERF domain
PRINTSPR003672.9E-10167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGGGAPPNFG RLSVNGPSSE GGAGHGSGGG AADGLAALPM PSRRPPLAPG GPAPLPAGLA  60
DHPAAGICST SYKSSGSHLG PYPGAPLLGA SPPSLGTSPA AGRASNSRRR NSSTNNVLSS  120
SLGAKASSSA PALSVKPDKN GATKYRGVRQ RPWGKYAAEI RDPHKGCRLW LGTYDTAEEA  180
ALAYDKAARE IRGPRAVVNF PNMPHSTASP HPDDESGQWD PLGESLGTSP LSSSFVTGTS  240
PLMGGSAPGR HAGGAGGRGD LHPGLMPNRV HKQRNAYGGF GSHKRDPEPI AEGDSDVDMD  300
DGDDGEDMDE GMAPGHGGGG GGRSRTRINV VTGVGSTRPP RQAAAGVAAA VAAARGGIDD  360
DFEPAPAPQP RGGGGGGGWG RQVSMDVEDE LADLADALLL LHESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-23145201663ATERF1
3gcc_A6e-23145201663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699213.11e-107AP2-domain transcription factor
TrEMBLA0A150FXJ50.0A0A150FXJ5_GONPE; Uncharacterized protein
STRINGEDO988531e-106(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-18ethylene-responsive element binding protein