PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ44188.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

C3H

Protein Properties

Length: 769aa MW: 78002.3 Da PI: 7.4654

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ44188.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.7e-06	96	121	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk +lC+ + tC+ Gd+C++aH KXZ44188.1 96 YKAVLCPLVKAKKTCPLGDSCSYAHN 121 88999999999**********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	7.3E-7	92	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.65E-6	93	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-4	95	122	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.967	95	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	128	158	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.409	131	155	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1	131	154	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MLGLAPGQPV PGAAGGTKLC HLLADEALLR RLSGSASSGP EDCVSLLRSL NLPDSFWTDE 60 FKVVPCAKTY SHKWTLCPCA HIGETARRRC PRAINYKAVL CPLVKAKKTC PLGDSCSYAH 120 NVFEHWLHPS RYKTRLCSFG RNCNRSICFF AHSAEELRCV PVTDEEKGDE SGYLLQLLMA 180 QESGLLPPSA LQPPAVSPLM PGLMPDLNSA FQQALSCPLP PSNRPSVNGL PDATPLISGR 240 PSVNGLPDLM SPGLGDHSAA VLAARASMSG IPDAPSAMMI PSRHSLSGLP DPSGLLAGRT 300 SLNGLQDVGL GAMGGHAMMR GRPSLNGIND PANMLLSMSA QHSMQRALSS ELSGTMHAAA 360 MQRALSSDLG SAPFHAAAAA SAMQRAMSSD LGAAQLNAAA AAANAAFNSV NGVAAAHAAA 420 MERAMSRELA GGIASPLQSA AAAALERAYS GREGTIPGVA GVGLPGPNGS GGAMAMSLER 480 VLTNSRSMNS SVSRDLSLGH TASINSVESD SLIQMRSGLG GMGHFGGSAA SAGPASMGPG 540 GNRPMGHMGY EPGHDPHAPP RLSDPGGGNF QALPMALQSP QQPRPQHAGA AAEAAGLLGT 600 DLAGLESLLP LVNNALASGA LALPGGGGSG AAAAAAARAV RRSNSGTSGR VVSPPLHDAG 660 GYGSPTHSGT LTPMSPNSAG GGADPGVGPD AATLNQQHQL RLQTSANSPP PAPDGMAQEA 720 MGRSAEGCGA IDQAYLHGLV ARLQDQGVNK EQLVSSLSQL LAQLMSVGN

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MLGLAPGQPV PGAAGGTKLC HLLADEALLR RLSGSASSGP EDCVSLLRSL NLPDSFWTDE  60
FKVVPCAKTY SHKWTLCPCA HIGETARRRC PRAINYKAVL CPLVKAKKTC PLGDSCSYAH  120
NVFEHWLHPS RYKTRLCSFG RNCNRSICFF AHSAEELRCV PVTDEEKGDE SGYLLQLLMA  180
QESGLLPPSA LQPPAVSPLM PGLMPDLNSA FQQALSCPLP PSNRPSVNGL PDATPLISGR  240
PSVNGLPDLM SPGLGDHSAA VLAARASMSG IPDAPSAMMI PSRHSLSGLP DPSGLLAGRT  300
SLNGLQDVGL GAMGGHAMMR GRPSLNGIND PANMLLSMSA QHSMQRALSS ELSGTMHAAA  360
MQRALSSDLG SAPFHAAAAA SAMQRAMSSD LGAAQLNAAA AAANAAFNSV NGVAAAHAAA  420
MERAMSRELA GGIASPLQSA AAAALERAYS GREGTIPGVA GVGLPGPNGS GGAMAMSLER  480
VLTNSRSMNS SVSRDLSLGH TASINSVESD SLIQMRSGLG GMGHFGGSAA SAGPASMGPG  540
GNRPMGHMGY EPGHDPHAPP RLSDPGGGNF QALPMALQSP QQPRPQHAGA AAEAAGLLGT  600
DLAGLESLLP LVNNALASGA LALPGGGGSG AAAAAAARAV RRSNSGTSGR VVSPPLHDAG  660
GYGSPTHSGT LTPMSPNSAG GGADPGVGPD AATLNQQHQL RLQTSANSPP PAPDGMAQEA  720
MGRSAEGCGA IDQAYLHGLV ARLQDQGVNK EQLVSSLSQL LAQLMSVGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002955400.1	1e-172	hypothetical protein VOLCADRAFT_106802
TrEMBL	A0A150G2W9	0.0	A0A150G2W9_GONPE; Uncharacterized protein
STRING	XP_002955400.1	1e-172	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	6e-36	CCCH-type zinc finger protein with ARM repeat domain