PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44322.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family Whirly
Protein Properties Length: 152aa    MW: 16462.7 Da    PI: 8.477
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44322.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly55.71e-17313511137
      Whirly  11 vkavrptfealdsgnlklkraGglllelana............taerkydWekkqsfalsatevaelvd..l.askesceffhdpaakgsneGkvrkal 94 
                 v+  +pt+ a   g+ +l+r+G++lle+ana            +++r+y+W+ k +falsa e++++++  +  ++    ++hdpa+ g +e   +k l
  KXZ44322.1   3 VQLLQPTWAARPDGSKQLERDGTMLLEFANAnpspagapqtagATNRTYNWGSKMVFALSANELGNILSgeVdKAERGITLWHDPAKLGKQEP--KKKL 99 
                 667789999999*****************98444444444333458*********************99753134556899*****9887765..799* PP

      Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                 +++ lpdG+  f   +v  +  +g es+svPvskaef v++s+
  KXZ44322.1 100 SINRLPDGALQF---QV--G--NGTESVSVPVSKAEFEVFKSI 135
                 ********7433...44..4..6799*************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.5E-381151IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.4E-291135IPR013742Plant transcription factor
SuperFamilySSF544472.82E-195150IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MCVQLLQPTW AARPDGSKQL ERDGTMLLEF ANANPSPAGA PQTAGATNRT YNWGSKMVFA  60
LSANELGNIL SGEVDKAERG ITLWHDPAKL GKQEPKKKLS INRLPDGALQ FQVGNGTESV  120
SVPVSKAEFE VFKSIANYAI PRLLGFNELF SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A1e-17114722162Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701785.15e-49transcription factor
RefseqXP_002946519.19e-47hypothetical protein VOLCADRAFT_86539
TrEMBLA0A150G3701e-108A0A150G370_GONPE; Uncharacterized protein
STRINGEDP067602e-48(Chlamydomonas reinhardtii)
STRINGXP_002946519.13e-46(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.24e-19ssDNA-binding transcriptional regulator