PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ46814.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

C3H

Protein Properties

Length: 2344aa MW: 236522 Da PI: 7.8666

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ46814.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.4	1.2e-08	2087	2107	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Crff++ G+C+ G+rC+FaH KXZ46814.1 2087 RICRFFLQ-GYCRDGERCRFAH 2107 79****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50297	11.665	191	231	IPR020683	Ankyrin repeat-containing domain
Pfam	PF00023	2.6E-4	191	222	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.247	191	223	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	2.3E-6	191	232	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.2E-6	191	232	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.60E-5	191	228	No hit	No description
SMART	SM00248	0.0022	191	220	IPR002110	Ankyrin repeat
PROSITE profile	PS50103	14.051	2083	2110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0022	2084	2109	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.37E-5	2086	2107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.9E-6	2087	2107	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-6	2087	2107	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2344 aa Download sequence Send to blast
MAESTQVPGS DGMYGSRRSR LQKVETKLSQ SLDSEDRRVK ELTEGILYDF LPAALNVMLP 60 RCEDPLQELD ADRCRAVASA ALAVSALMNA PPGFLEFLLC VPWRKLSQLY PKSDSIDKLV 120 SNLQVTDEER RKLVNTRIDP ALMNTVLDFL YKEKHLDSVP PMLQLTPINN LQLDDKSVPV 180 VGRETVAAVL DGATPLHCAA LRGNPAQVDH LLYCGADPTL KTAAGELPVE LVPVCGDRAP 240 GGGASPAARA CRCMGPHDQE VWECRSRLAR SLIARRCFFC FRVGLFSWLR LVLFCLLCLL 300 GQAGRHITIS RPIVERHIDT RRQQKIAAAR ARAHALVTRM RSEAEAGRTH LTQAKRECME 360 SAAFQRGPPD ISQMCFTDPT KSPPPPTLPI SQIHDINLHL QESGTSSTGE ELASEKAFKC 420 FVRSVHALQS LDLHGETVPQ VFAELVQAGS MESRETHVLE DEQADLYSCW AESVLLKFRG 480 CTCPGCATLA IQAVRMAHMQ ATRLFGKVDR LKQTHAERWQ AVGQALARVV YVHICLLLET 540 EAQASPTRSL VFRAETCLRE WDRLEKAGLT QGAGVLDPRH VAALQRWAKT ADSDLYLAEA 600 LHGQSLLPSK TLQEVVISSV THSPDGLPIL ARPVNGEVVA ALEQAITLAS LPSPLLAHIV 660 RSVVNNAVAE LAAAARLREL VGSKGAAALG GGGTSEAVAA LTEALRAAEP FRERLGPEYD 720 AATELRSKWT QRATAVEKLE GAVEDVRAYA SAHPLSFTLA AAAAAAVAQG PRQEGSAAAT 780 AAASSRVSGS GSAEAGDSSV GESGGSCTGT ARSSADGAPA ADLVEWDRRI KQLEQAMNDA 840 KDANVSVTKA KRLLKEMTAI AAAAEASRHL EAVMARRPSG PLQLKLALNR AEAAASSLSG 900 LGGPPTPGLA DVLGPLMAAA RRRLDTERAA EALSKAAASF RTLADLGRLE AAIYNAKKIG 960 AEELDPESYR TSLELRAQLQ EAARVRGVLE TALRNLQNQL RTEDAEALER ALQDAAKWED 1020 LLAADTAKAR KALEQWRCMT VSDAKLARLL REGASTGGLA KAIQEAAASG VKVQHAKRVL 1080 KLMQALETAL ASASGADTGA AERHSLVKSK LDAAEAGGVT TGPLPEAARR MLTRLAATIA 1140 REALEAALKP HSDWSINHRV SVLREALERT EGVLGEEDGA ASGAADVSER PPSRQLANGT 1200 AGSGGKGSGS SRGKRSSGGS SGSGGDVHGG PEDSCASAST ASTPSCLASC STSCSSSGSG 1260 SAGGSGLADD EVVVAVRALA RKARLVLEED QAELARIERE RQEAERARKE AQERERQERQ 1320 RQEQERQKRE KAEAAERERA LADKREKAKA EKARQQQQQK QQQLEQAQQQ KSKAAAAEAS 1380 SASVAGGTER AGGKGSNGKH GQARGANSAA AQAAAAAAGA SNGRPGAAAG SGASAAGKTG 1440 LQRDAPVLAQ AAPPTSAKLA DPPAANMFTA PAGPAVAAAA AGAGVRDGAP PAKQRPRPSG 1500 GAQAAIATAP CTVVSAAAAI HSRGDSLESL GEVVHKLNKD VIDALDMDSD TVRGLAPGPA 1560 GPSPAVGAAS GSGGGSTVTP PLGRGSASGG GSFGRSGSGA AATLEGVLDL PPSQRTSSFM 1620 SSVASADDVM LHGVGGLGGG APAGGGLGFG SAPGGAVLGG GPSLSTISTG QASTADGGGS 1680 SGGGAAVVAA EAGVRTPPAG AAAGSALGGG GPVSPELGPA SSGAAAANSV GSTGATQTAK 1740 PRFGFVDLGG ASWGLDSPSF GQLSGNAGTG ALFPSLQPSG IGDYGAILGG AKPEAANGWP 1800 TVTSLGAGTG VGVGIGSMAY GGPLAGQNGG LVGSPEDDAA AALLAAAGRQ PGAGMQGPGG 1860 AGGAGSGGQA VLGSAGVGSL GGLQILTDES SLGPLMGVSL ASPRSSVGAA GAGIQGLLRV 1920 RPLGGAGQLA GVTGRSSLTL QASPPSVLAS QQNGAGGMGA RCGFWTPPSF QSAQGDLGAD 1980 GGGAAATAAA LAGAGPGLGA SLQQQQQQAG LHLVLGGGGG VNGLQLVDWP QQLQQQQLGQ 2040 QQLQELPGGL QLLHLGPGTG TTSSTISGAV GTGAQVLRGA GTAAVSRICR FFLQGYCRDG 2100 ERCRFAHLGA APTSPPTGRG GALTAAQLMQ LGASAHAQHQ MLSQTGGSGT AAAGGGGFGP 2160 SMQGGGGPTG GGGLIVANVG QGSAVGSFAF GAPGAEAFAP LGGELHAKAA GRLGMGMGGP 2220 AGGSGGASMA GLSAALPVGM SAGGGGSGSG TPGLVGQQQT LQIRDNTTGA TFPAILSPVA 2280 QIGAGQQALP VAPPGATGAA TLQAPQSPQQ QQQQLLLSLP DDLTFSPPPA AGPLQGAGAG 2340 SKKK

Sequence ? help Back to Top

Protein Sequence Length: 2344 aa Download sequence Send to blast

MAESTQVPGS DGMYGSRRSR LQKVETKLSQ SLDSEDRRVK ELTEGILYDF LPAALNVMLP  60
RCEDPLQELD ADRCRAVASA ALAVSALMNA PPGFLEFLLC VPWRKLSQLY PKSDSIDKLV  120
SNLQVTDEER RKLVNTRIDP ALMNTVLDFL YKEKHLDSVP PMLQLTPINN LQLDDKSVPV  180
VGRETVAAVL DGATPLHCAA LRGNPAQVDH LLYCGADPTL KTAAGELPVE LVPVCGDRAP  240
GGGASPAARA CRCMGPHDQE VWECRSRLAR SLIARRCFFC FRVGLFSWLR LVLFCLLCLL  300
GQAGRHITIS RPIVERHIDT RRQQKIAAAR ARAHALVTRM RSEAEAGRTH LTQAKRECME  360
SAAFQRGPPD ISQMCFTDPT KSPPPPTLPI SQIHDINLHL QESGTSSTGE ELASEKAFKC  420
FVRSVHALQS LDLHGETVPQ VFAELVQAGS MESRETHVLE DEQADLYSCW AESVLLKFRG  480
CTCPGCATLA IQAVRMAHMQ ATRLFGKVDR LKQTHAERWQ AVGQALARVV YVHICLLLET  540
EAQASPTRSL VFRAETCLRE WDRLEKAGLT QGAGVLDPRH VAALQRWAKT ADSDLYLAEA  600
LHGQSLLPSK TLQEVVISSV THSPDGLPIL ARPVNGEVVA ALEQAITLAS LPSPLLAHIV  660
RSVVNNAVAE LAAAARLREL VGSKGAAALG GGGTSEAVAA LTEALRAAEP FRERLGPEYD  720
AATELRSKWT QRATAVEKLE GAVEDVRAYA SAHPLSFTLA AAAAAAVAQG PRQEGSAAAT  780
AAASSRVSGS GSAEAGDSSV GESGGSCTGT ARSSADGAPA ADLVEWDRRI KQLEQAMNDA  840
KDANVSVTKA KRLLKEMTAI AAAAEASRHL EAVMARRPSG PLQLKLALNR AEAAASSLSG  900
LGGPPTPGLA DVLGPLMAAA RRRLDTERAA EALSKAAASF RTLADLGRLE AAIYNAKKIG  960
AEELDPESYR TSLELRAQLQ EAARVRGVLE TALRNLQNQL RTEDAEALER ALQDAAKWED  1020
LLAADTAKAR KALEQWRCMT VSDAKLARLL REGASTGGLA KAIQEAAASG VKVQHAKRVL  1080
KLMQALETAL ASASGADTGA AERHSLVKSK LDAAEAGGVT TGPLPEAARR MLTRLAATIA  1140
REALEAALKP HSDWSINHRV SVLREALERT EGVLGEEDGA ASGAADVSER PPSRQLANGT  1200
AGSGGKGSGS SRGKRSSGGS SGSGGDVHGG PEDSCASAST ASTPSCLASC STSCSSSGSG  1260
SAGGSGLADD EVVVAVRALA RKARLVLEED QAELARIERE RQEAERARKE AQERERQERQ  1320
RQEQERQKRE KAEAAERERA LADKREKAKA EKARQQQQQK QQQLEQAQQQ KSKAAAAEAS  1380
SASVAGGTER AGGKGSNGKH GQARGANSAA AQAAAAAAGA SNGRPGAAAG SGASAAGKTG  1440
LQRDAPVLAQ AAPPTSAKLA DPPAANMFTA PAGPAVAAAA AGAGVRDGAP PAKQRPRPSG  1500
GAQAAIATAP CTVVSAAAAI HSRGDSLESL GEVVHKLNKD VIDALDMDSD TVRGLAPGPA  1560
GPSPAVGAAS GSGGGSTVTP PLGRGSASGG GSFGRSGSGA AATLEGVLDL PPSQRTSSFM  1620
SSVASADDVM LHGVGGLGGG APAGGGLGFG SAPGGAVLGG GPSLSTISTG QASTADGGGS  1680
SGGGAAVVAA EAGVRTPPAG AAAGSALGGG GPVSPELGPA SSGAAAANSV GSTGATQTAK  1740
PRFGFVDLGG ASWGLDSPSF GQLSGNAGTG ALFPSLQPSG IGDYGAILGG AKPEAANGWP  1800
TVTSLGAGTG VGVGIGSMAY GGPLAGQNGG LVGSPEDDAA AALLAAAGRQ PGAGMQGPGG  1860
AGGAGSGGQA VLGSAGVGSL GGLQILTDES SLGPLMGVSL ASPRSSVGAA GAGIQGLLRV  1920
RPLGGAGQLA GVTGRSSLTL QASPPSVLAS QQNGAGGMGA RCGFWTPPSF QSAQGDLGAD  1980
GGGAAATAAA LAGAGPGLGA SLQQQQQQAG LHLVLGGGGG VNGLQLVDWP QQLQQQQLGQ  2040
QQLQELPGGL QLLHLGPGTG TTSSTISGAV GTGAQVLRGA GTAAVSRICR FFLQGYCRDG  2100
ERCRFAHLGA APTSPPTGRG GALTAAQLMQ LGASAHAQHQ MLSQTGGSGT AAAGGGGFGP  2160
SMQGGGGPTG GGGLIVANVG QGSAVGSFAF GAPGAEAFAP LGGELHAKAA GRLGMGMGGP  2220
AGGSGGASMA GLSAALPVGM SAGGGGSGSG TPGLVGQQQT LQIRDNTTGA TFPAILSPVA  2280
QIGAGQQALP VAPPGATGAA TLQAPQSPQQ QQQQLLLSLP DDLTFSPPPA AGPLQGAGAG  2340
SKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950231.1	0.0	hypothetical protein VOLCADRAFT_90642
TrEMBL	A0A150GAF5	0.0	A0A150GAF5_GONPE; Uncharacterized protein
STRING	XP_002950231.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8164	3	3