PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ47075.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family AP2
Protein Properties Length: 916aa    MW: 98964 Da    PI: 5.3616
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ47075.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.4e-08646693151
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 s y+GV wd+ +++W+A+I +   ng + +  lg + t e+Aa+a +aa +
  KXZ47075.1 646 SVYRGVVWDEAKNQWRAQIAE---NGGTSYTCLGFYSTQEDAARAFDAAVL 693
                 78****************877...4556999*****************976 PP
2AP237.27.3e-12728779155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV+w++   +WvA ++d       ++  ++g++ ++e+Aa+a+++ ++++ g
  KXZ47075.1 728 SQYKGVSWNSACSKWVAVLWD----ReLKRARHIGSYESEEDAARAYDKEALRMLG 779
                 78*******************....3344888*********************987 PP
3AP2445.5e-14814863155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+w+++++rW+++  ++  +   k++ +g+f  + eAa+a+++a ++l+g
  KXZ47075.1 814 SQYRGVSWHERSQRWEVR--VW-GG--GKQHFIGSFTEEVEAARAYDRAVLRLRG 863
                 78**************77..55.22..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-4646691IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-10646704IPR016177DNA-binding domain
PROSITE profilePS5103210.362647704IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-10647704IPR001471AP2/ERF domain
SMARTSM003801.3E-4647710IPR001471AP2/ERF domain
PfamPF008471.2E-5728779IPR001471AP2/ERF domain
CDDcd000181.17E-13728789No hitNo description
SuperFamilySSF541711.5E-12728788IPR016177DNA-binding domain
PROSITE profilePS5103213.274729787IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-13729789IPR001471AP2/ERF domain
SMARTSM003806.5E-12729793IPR001471AP2/ERF domain
PfamPF008471.7E-6814863IPR001471AP2/ERF domain
CDDcd000189.23E-11814877No hitNo description
SuperFamilySSF541711.24E-11814876IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-10815876IPR001471AP2/ERF domain
SMARTSM003801.5E-10815881IPR001471AP2/ERF domain
PROSITE profilePS5103214.434815875IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MSISPELDWE EFLARQDRFL TERQCKIQMS EQERRLRTVL EMYKECTFQP RITRKAAALP  60
SRAVEDLVDG GRSRREEWME QQRALQQLRE IEEATFRPQL LTKEAYAHVR PRINLKNPDA  120
YLAHEAHKQR QREALRAELQ SEREALELQH CTFKPQTTPL PAYLIRKLQE QHLQQLQKQS  180
QEEQQQEPGN EWAEAGMLLQ ERYAYEQSLE LHDSGAHRDP AENGSYAAQF ETYAAEYGSF  240
RTAAETPSFE QMGYDVASLL TQNQVQSGND LSVTIPSPFD VPTSLITGIT GVSPLPSILN  300
SPLLESLVSA SPNAQLAAMF AQLAQSTRGG QTPAFLEAFT PGTTGGWPES TRSGGASLRQ  360
LLDLQEASSL GLGEGDLDDP AMADALLKGL VPLPSARRTS VSGGGGAQGG ARGYGAEGGN  420
GTSGQMSVEQ LADLGLQSPS ALGVGGNGHV LYKGVHYDKE QDTWQVVVFD GLRYTVVGEY  480
TNELEALVAN ELLSPAQPMQ GNFNTMLAGS GGSGPAGDGD GAEGQAGSGA AAAAAADEDT  540
EQVGHGVTGR GGGSRTPNIN DYLHRLANSN PLLGSAFSPS GAALSPLFSA LSPAGGGFTA  600
LLLPTPRDTS NGGGAHLLPS PSALGRIGNL LPPAPDIIKP DGTRESVYRG VVWDEAKNQW  660
RAQIAENGGT SYTCLGFYST QEDAARAFDA AVLRSGNKEL LNFPLVPKAA QTGPKARGPR  720
APGTRVTSQY KGVSWNSACS KWVAVLWDRE LKRARHIGSY ESEEDAARAY DKEALRMLGP  780
EAGLNFRESA ADYLAEIGAD GVPEGTHNSN KGSSQYRGVS WHERSQRWEV RVWGGGKQHF  840
IGSFTEEVEA ARAYDRAVLR LRGQDARSRS RMNFPLSDYN LDELGVPGDP AGFLGMAVGM  900
RSTPEPARGR KAVKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946570.11e-157pathogenesis-related genes transcriptional activator
TrEMBLA0A150GC000.0A0A150GC00_GONPE; Uncharacterized protein
STRINGXP_002946570.11e-157(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP574088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-21AP2 family protein