PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ48608.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family NF-YC
Protein Properties Length: 256aa    MW: 25508.1 Da    PI: 4.9241
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ48608.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.67.2e-157842197
       NF-YC 21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                 Pl +rikk++++d+dv +is  +P+l+ +a elf+ ++  ++   a++ + +tl  s ++aavt  ++ dfl + v 
  KXZ48608.1  7 CPLaTRIKKMMQTDDDVGKISQATPILIGRAMELFLEKICKQAIGVAQSRQAKTLTPSHLKAAVTADTTLDFLAELVA 84
                57636********************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.71E-191188IPR009072Histone-fold
PfamPF008081.5E-161170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.2E-241183IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKSKKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEL FLEKICKQAI GVAQSRQAKT  60
LTPSHLKAAV TADTTLDFLA ELVASAPDLP PPDTEGTDGA PKAAKRRRGK NLGPKGAAAG  120
APLPAAVPGP TGPAVKLEPY AGLLPEGLQL PAAGKGEPDA MDVEGPGGHG AVGPSGQLPL  180
ELGHPLAGAD AAAGREGGGS APPPELQAQA APGTAPTLSG GAEGGLQAGG SMLPQLGSSL  240
GFIPGPSDMD DDYDDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-1812701674Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106PKAAKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GFJ31e-176A0A150GFJ3_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP33431313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-25NF-YC family protein