PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ51238.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

C3H

Protein Properties

Length: 706aa MW: 69738 Da PI: 6.1651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ51238.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	29	50	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r+G C++Gd C+FaHg KXZ51238.1 29 ACPEFRRNGCCRRGDACPFAHG 50 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.221	1	13	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-5	22	52	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.01E-5	23	54	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-6	24	51	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.892	24	52	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-5	29	50	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-5	57	89	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	18	60	83	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MFQFKCPFAH PGEKAKRRDP RKYRYSGTAC PEFRRNGCCR RGDACPFAHG VFECWLHPSR 60 YRTQMCTDGS SCKRRVCFFA HTESELRKPE EDPLWLQQQL QAELAAEQQV QQQIQALKVF 120 ANILGPNTST AGGQQAASNQ PPGLDMLKNL PSATLTQLLG AAQSPAGSGD GLLQLLQLVE 180 QQQAASAAGP PPAAAATPLA PAASAPANLA TLMSAVTAAA GAPGSASGGP GSGPDAQLKL 240 AQQLLQQFQQ QQTQQQQAQQ QQAQQQQAQQ QQGGQDALQA RLMAQLAGMA LQPQKSVDGE 300 AKASQAQAPA QAAQPPANAN LAMELLSFLA NQQQQAQQQQ QQQQHAAAQL EQQQQQLMAA 360 AAAALASASQ APQAQQPAPA PQPAAAAGAG SPPGMSPALL QQLSSMGLDL SALGIAPESQ 420 GSQAAASAPA PAAPAPQDPL SLLAAALGQG TAAAVPPPPA KLDVPAPAPP APRVSSGTSG 480 TPAAPAAALD PLSALLAAAA GQPGGAAGVS PAMLSSLLGQ LSMGGGAAAP SPTQAAPAQA 540 AAQQPPAPAA STPPLAPERS AGSVLSEGAT SAAGRQSPAP APGASTASPP AAAALPSDAG 600 GAAPQSPPTT AQHGVSPAAA SSAAAAPAAD GSGPNIASLL AGFYSKPEHM LTAQALLERM 660 AGGSTVGGLD PATMAALASM AGGAAPAPGP SSTGSGGEEA ASVSSA

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MFQFKCPFAH PGEKAKRRDP RKYRYSGTAC PEFRRNGCCR RGDACPFAHG VFECWLHPSR  60
YRTQMCTDGS SCKRRVCFFA HTESELRKPE EDPLWLQQQL QAELAAEQQV QQQIQALKVF  120
ANILGPNTST AGGQQAASNQ PPGLDMLKNL PSATLTQLLG AAQSPAGSGD GLLQLLQLVE  180
QQQAASAAGP PPAAAATPLA PAASAPANLA TLMSAVTAAA GAPGSASGGP GSGPDAQLKL  240
AQQLLQQFQQ QQTQQQQAQQ QQAQQQQAQQ QQGGQDALQA RLMAQLAGMA LQPQKSVDGE  300
AKASQAQAPA QAAQPPANAN LAMELLSFLA NQQQQAQQQQ QQQQHAAAQL EQQQQQLMAA  360
AAAALASASQ APQAQQPAPA PQPAAAAGAG SPPGMSPALL QQLSSMGLDL SALGIAPESQ  420
GSQAAASAPA PAAPAPQDPL SLLAAALGQG TAAAVPPPPA KLDVPAPAPP APRVSSGTSG  480
TPAAPAAALD PLSALLAAAA GQPGGAAGVS PAMLSSLLGQ LSMGGGAAAP SPTQAAPAQA  540
AAQQPPAPAA STPPLAPERS AGSVLSEGAT SAAGRQSPAP APGASTASPP AAAALPSDAG  600
GAAPQSPPTT AQHGVSPAAA SSAAAAPAAD GSGPNIASLL AGFYSKPEHM LTAQALLERM  660
AGGSTVGGLD PATMAALASM AGGAAPAPGP SSTGSGGEEA ASVSSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150GN80	0.0	A0A150GN80_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	6e-43	C3H family protein