PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ51980.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB_related
Protein Properties Length: 1378aa    MW: 135301 Da    PI: 7.577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ51980.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-1556100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+ ++++a k++G   W++I +++  ++t+ q++s+ qk+
       KXZ51980.1  56 RERWTEEEHAKFLEALKLYGRA-WRKIEEHVS-TKTAVQIRSHAQKF 100
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-1551106IPR009057Homeodomain-like
PROSITE profilePS5129421.451105IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-954103IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-1554103IPR006447Myb domain, plants
SMARTSM007171.2E-1255103IPR001005SANT/Myb domain
PfamPF002495.1E-125699IPR001005SANT/Myb domain
CDDcd001674.28E-958101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0032922Biological Processcircadian regulation of gene expression
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0043966Biological Processhistone H3 acetylation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1378 aa     Download sequence    Send to blast
MEEVKGSKAG SAAVRAPAQP QPAGPASAPS SSAPLSDQQA CPKVKPRKPY IITKQRERWT  60
EEEHAKFLEA LKLYGRAWRK IEEHVSTKTA VQIRSHAQKF INKLERNKDT GSTEDGEGIS  120
IPPPRPKRKP SRPYPRKEPV ADNSGSGAAD ASGVNGGAGG GTVMGSQGTG PGTGQQQSKL  180
SMPVPPRSSH MLQAPMNALQ QLQLQMPLHL SAQQQQTLGP TVAAATAAAL KQQQERQQTS  240
HYSEVTDATV AAVAAAASAA AAAAAAAVVA AAGQQVQAHL QAHPPQGFPF FGLPPSLLAQ  300
ITLQNPALEA MPFPSGASSQ PGPPPLTSGG SGEATGHRPW ASSADAGPWM AVHPDRYHHL  360
HHHYHHYHHH GGDGRPQQPL AEATATTTDA ENSGPLTNGE LMNIAMGVGA GQESRGSDGN  420
SVVTEREGEQ GDGDGGDGDG EGDDTGPDAV AEDQAEQSNR ADTQWPDGGQ AAEPAGMTTS  480
QYWQMLGMID GGRPGHAGAA AAAGHAPREG HLHPHPHGLP HGHKAISNST RSTGSGGALR  540
AKGIAKAHTH KEPTAFARDQ HKKAAARTTS PCCSDMSNML RSHHHHHHHD PHSPSIQDVG  600
AKPPGRGSCD TNGSDSPLRA NRNDAEIREA QGSNPTNHNN GNGNGSSGNG SAGNGNGSGS  660
QGNGSQGNGH SGGNGHSGGN GHSGGNGHSG GSGGGGGSGG NGNGHSIKDS NNPTGNGHSS  720
GHGNGNGHSS ANGTSQHHHH HHHHHALPRA VAYDAGRYPS HHETQDRDGN GASGIGVRPP  780
SSEDEDIAVG EGAEAGVEAA VRPGDGGNAD GQELDNAGTT LDGDAGACQG AGGSTAPSDS  840
GQPGGGGSSR GVAGSGDKAK ESGVSAGAGG SGAGGSGSAD KPDRTGSGVV CGGGESGGGG  900
AAGRGVTASD SVIGRMVRIS SGNGAFRRPE GALGLASGPD RPVGQVAGSA FSIPPPLNPR  960
GGGAIGSSGA GARGSSAPTA PRSTGANKVQ TLLAQLQAHA SLAQYQAPAP GVPASFSQQA  1020
MHTATAAAQP FYATASLAAN VVHQGLLGFA APQAAAAGIP LPASAAVAAS AAAVAAAAAG  1080
KLAVPPATDS IPLAVALSQL AAQGGYGPRS AAEGLSDLPP VMPLSAGPAN SVAIAALGSI  1140
GAAASAVTGD AAGGSAGPAA YAQLVALMKA AAPQATRSEG AVVAAAAAAA LSPRAAQEAS  1200
EVGAAGGDGS SGFAGGAGMP RALSASAPLL AAAVLAAAQQ QQQCAAPRLL QAPRMRISSE  1260
GGLGGAAQQP VAAALASPRA VEASAADLRR RTVMVDGSNG AAAVAAAVRS AGAAASGGGR  1320
VTASGSGAAG AAAPVGMDRA EGMQEPAAAG SGKRSAGSRP SDTSGRPASP PRKRPHQT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GRN40.0A0A150GRN4_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-29circadian clock associated 1