PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ52576.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 222aa    MW: 22478.8 Da    PI: 6.1188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ52576.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06153176226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k ++Cr+f r G+C   d C+F H+
  KXZ52576.1 153 KVPICRYFKR-GYCYENDECRFLHV 176
                 889***9999.*************7 PP
2zf-CCCH19.32e-06178198425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 e Cr+f r G C+yGd+C + H
  KXZ52576.1 178 EVCRNFKR-GNCRYGDNCYRLH 198
                 78******.*********8888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.202151178IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4151177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5154175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4155176IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4178198IPR000571Zinc finger, CCCH-type
SMARTSM003560.15178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4178199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357179201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEEYFKSHTC GKTCKALGLD VKSSPLAELA NIRGRIKQAA LRYQAAILGT EQPAGGDGAG  60
GDGKAADDVN GGGNDGGGAA AAVPDVSSAE YMDVLKGFLG ELVGEDGNVT EDDCGEGTAA  120
AAGGADDGAG GAGSAGGAGG AGGAGGAGGI GGKVPICRYF KRGYCYENDE CRFLHVKEVC  180
RNFKRGNCRY GDNCYRLHEQ QPASPSPPTP PPTAAKSRHR YK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GRT11e-156A0A150GRT1_GONPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-07C3H family protein