PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ52722.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 198aa    MW: 19756.5 Da    PI: 8.4424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ52722.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-101741327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C ++++ G+C +G++CkF+H++
  KXZ52722.1 17 EPDCAHYLKKGWCAFGPTCKFNHPE 41
                589********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6661442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-61641IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-81741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-42040IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLASSLGFAG YPVRAEEPDC AHYLKKGWCA FGPTCKFNHP EIQPSILNTY SFNQPPAAYV  60
SLPTTTFPST AVYSVPSAVP TLYYLPPGVG PSQLAGSTVG LLPGNVGAVT AGPTSQLTFA  120
QQSALGAAAP SQLYRQQAAL MPYGSMGETA IGGGMGGGMG GGMGGGMGGG MGGSSVSALQ  180
EAFQGLALGR AGGLGRSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947962.12e-68hypothetical protein VOLCADRAFT_103744
TrEMBLA0A150GSN01e-136A0A150GSN0_GONPE; Uncharacterized protein
STRINGXP_002947962.17e-68(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-12zinc finger protein 1