PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ52853.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

Dof

Protein Properties

Length: 488aa MW: 51163.5 Da PI: 8.2567

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ52853.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.6	2.7e-33	93	153	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+ cprC+s +tkfCyynny+++qPr++Ck+C+ryWt+GG+lrn+ G+grrk+k++s KXZ52853.1 93 PDKKEVCPRCNSGDTKFCYYNNYNIKQPRFYCKTCQRYWTAGGTLRNIAPGSGRRKSKSKS 153 688999***************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-19	89	140	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-28	95	151	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.499	97	151	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	99	135	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAARGGDVTS SSGQLEDWAE AVAADLKEDR ADEDGEERPQ ADRTAGKLSR QRSGSYQPPV 60 VTKRQRPPQE RESSPEEEEE GGEERNRPKL PRPDKKEVCP RCNSGDTKFC YYNNYNIKQP 120 RFYCKTCQRY WTAGGTLRNI APGSGRRKSK SKSAGRDMRN SPSLADHLTA AAVAQSGMFG 180 LPVGAPSAYG NLSAAHLLAA TDPTGLLAGS AAATAAYAHH HQQLLASHGS LAGLKLSGAA 240 AAAQLQSPWA SGTSIAPDLA GSALDQLHGH MGHAAGASAA LAQLAAGQQA LDARALLNSH 300 QNHHDDLQSH SLSLRQLAAA HASAVQQSNG LLHRDGSAAL SREELARGPS RSASPPPAQQ 360 RQLSSPQQHN SQVSQQPSPP PAQRNGYGSE DLEGEDVEVY YGRPVRVKSV HDSEGALLAN 420 GNGLGAAASL GLGHSLNGSQ LASLSLPPSM ASLAAVMGPP GSSSVHQLLG QQDGGRVWER 480 KVMVALRT

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAARGGDVTS SSGQLEDWAE AVAADLKEDR ADEDGEERPQ ADRTAGKLSR QRSGSYQPPV  60
VTKRQRPPQE RESSPEEEEE GGEERNRPKL PRPDKKEVCP RCNSGDTKFC YYNNYNIKQP  120
RFYCKTCQRY WTAGGTLRNI APGSGRRKSK SKSAGRDMRN SPSLADHLTA AAVAQSGMFG  180
LPVGAPSAYG NLSAAHLLAA TDPTGLLAGS AAATAAYAHH HQQLLASHGS LAGLKLSGAA  240
AAAQLQSPWA SGTSIAPDLA GSALDQLHGH MGHAAGASAA LAQLAAGQQA LDARALLNSH  300
QNHHDDLQSH SLSLRQLAAA HASAVQQSNG LLHRDGSAAL SREELARGPS RSASPPPAQQ  360
RQLSSPQQHN SQVSQQPSPP PAQRNGYGSE DLEGEDVEVY YGRPVRVKSV HDSEGALLAN  420
GNGLGAAASL GLGHSLNGSQ LASLSLPPSM ASLAAVMGPP GSSSVHQLLG QQDGGRVWER  480
KVMVALRT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150GSR1	0.0	A0A150GSR1_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4655	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-23	cycling DOF factor 2