PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ52926.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family LSD
Protein Properties Length: 90aa    MW: 9236.64 Da    PI: 7.2413
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ52926.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.93.4e-131640125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gC ++L+YP GA sV+C++C+ V
  KXZ52926.1 16 CNGCSVMLMYPMGAQSVKCSVCHYV 40
                **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-111441IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-111640IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MCHAVTQVPV YGNLVCNGCS VMLMYPMGAQ SVKCSVCHYV TPVTSGTAGP GGSGQPLPKP  60
KQTVVVENPP TYDDKGNEVA NIAVGVKADA
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001697083.14e-39zinc-finger protein Lsd1
SwissprotQ6ASS24e-12LOL3_ORYSJ; Protein LOL3
TrEMBLA0A150GSU77e-58A0A150GSU7_GONPE; Uncharacterized protein
STRINGEDP007752e-38(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-11LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]