PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ53884.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family CPP
Protein Properties Length: 1442aa    MW: 141219 Da    PI: 6.3821
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ53884.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-14282319442
         TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++C+Ck+s+Clk+YC+Cf+ag++Cs+ C+C+dCkN+ e+
  KXZ53884.1 282 RSCRCKRSQCLKLYCDCFSAGQYCSD-CSCQDCKNTPEH 319
                 78************************.********9876 PP
2TCR49.67.9e-16352389239
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 +++gCnC+ks+ClkkYCeC++ g++C+ +C+C++C+N 
  KXZ53884.1 352 HSRGCNCRKSHCLKKYCECYQGGVTCGPQCSCQECENL 389
                 689*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-14279319IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.415280391IPR005172CRC domain
PfamPF036389.0E-12282316IPR005172CRC domain
SMARTSM011142.1E-11351392IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.5E-12354388IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1442 aa     Download sequence    Send to blast
MGAGMGSGLS GSLGGLRSGG LGTGLSGVLG GFGGPSNDLT FGIHSSGADG RGAGESFQDP  60
TSRLPLPAPL ELDAVNPRML RGSSGGGCEA LHTPSAHDAE IFHCSGQQQQ GGDAGGTGNG  120
GAVERHGIST DPISRQASGA GAAARTGSGS GSLSAAAVAT AAAAARLGLP PRGGASGGAG  180
AGAGCGSGIG GAGAGGGSTP ATLQRPQRTR TANSMLFGGT GGAGAFEVPG TSSRQNSGAD  240
SEGPGHDPSS LPGRLFPPPR RPGGSSGGGV SKVRRGSDTN GRSCRCKRSQ CLKLYCDCFS  300
AGQYCSDCSC QDCKNTPEHA ALVRQRRVDI AARDPTAFKR KILNNGNGRG IHSRGCNCRK  360
SHCLKKYCEC YQGGVTCGPQ CSCQECENLG PNSVASDDTA GGVAGRSGAG NAANKKRKPP  420
AKKGSGKRKG GGRRGNVTTS DEEEVEVEDE LLAEDDPLPP PRRRLSVQSA QAAAGDESDG  480
PSPPSSRGGS LGRYGSLPLP MPQPSLATAF GGQAAAAAAM GRRHSGAFGA EDATAGCGIA  540
AGRASSGFGS LQMPLSLSLP INISSMPSLS HLVSACVPAD GFSADPAPFA ARRVAHGGAF  600
PQGASGAGAG LHPAGMSLPP LPPPPQHQQH PSQLQRQLSQ QVMQSQLPSQ HALQERTSGG  660
GAAPALPPLH PGEGAQGPSQ QPMQHSAVAE PAHQVSEPAA PAYAQAVMAG PAAAADTGGS  720
GSGSGSGGAD IGEAALDVDA GIAVSGSPQD VQRQTPSQQQ QQPGKEHGYE QQAGPQAAAG  780
EAGAGGKEEQ ALSSGEAETE QRAPAPGPGG GTAVFVPCIA DESSRDAPMS DGDPAVASAA  840
AAPAAGSASK PNPEADPYSL APVGSMAASA AATSPPAATA AAANVDTVDA AALGIPGGVK  900
IPRLNAPPPG SLQQQQQDGQ QQEQQGQSPG GSLHGFHLFD TPRTCLLGAL GSAMVLSTPP  960
FSVLLNSDNE EDEQYGGHHR HRNPFRSGAA VTAAARFTPR GAAAAGLAMA GAHLQPQYVP  1020
QARARRGGGA IGGGGHRAVA AATAAARPHG GELDYEAADA MLAAFAGDVA DAVLQRNSTA  1080
AAAEATGAEA AVGGGSVGID GPPDSARTGV SGLADMAGGW LLGGDTPCAG GAGDPAFLLP  1140
ITQSWELGTV FSMPKHNPGN DMAPAAAADG SSNAAGCSGG ADALHYSGFQ ASFPWAGAHD  1200
GAATDGPDAR ASGSGAAGFR TLGAGAASAA IHTLLPPVRT VGPAAAAAAA GAGVRRLSSS  1260
SSPVGKRKAA MLDEDYQPSD DDDDDPRENW VGHGASPAKQ RALGGGPASR PLRPMQPRAS  1320
DADDPPYEPM RAKVGSAEPD PSNNPNITGG AAGFPPPLGS SAAAVDGAPC GAAPAVAPGA  1380
GGLPLPPPMS LPLPLPNGAA PSVVDPASES PFIVSVFGAG PAAAGAAGDQ GARPAVSTEL  1440
TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2128238912121Protein lin-54 homolog
5fd3_B1e-2128238912121Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00044PBMTransfer from AT3G22760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GVR00.0A0A150GVR0_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.14e-32Tesmin/TSO1-like CXC domain-containing protein