PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ54686.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family NF-YB
Protein Properties Length: 236aa    MW: 23550.1 Da    PI: 4.0372
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ54686.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.52.9e-1712113397
       NF-YB   3 eqdrflPianvsrimkkvlP....anak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 e+d  +P a v ri+k  l     +++k   iskda   + e    fis+++s a+d cq+++r t+n+dd++ al++l f + v plk  l+ ++e+ 
  KXZ54686.1  12 ETDVDVPRALVKRIVKAKLQgltgGDGKefgISKDALTALSESTKVFISLIASTANDICQEKRRSTVNADDIFNALGDLDFPELVGPLKEQLEAFKEAT 110
                 6788899999****99988622223555666******************************************************************98 PP

       NF-YB  95 gek 97 
                 +e+
  KXZ54686.1 111 KER 113
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-317124IPR009072Histone-fold
SuperFamilySSF471132.44E-2314123IPR009072Histone-fold
PfamPF008081.0E-101787IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDVQNASPEK PETDVDVPRA LVKRIVKAKL QGLTGGDGKE FGISKDALTA LSESTKVFIS  60
LIASTANDIC QEKRRSTVNA DDIFNALGDL DFPELVGPLK EQLEAFKEAT KERSKSRPSK  120
KRKSTADAPA AAPRTAMGVA GAVDDAADTG GEGEGDAGPL DGDLAGALVG DAGPGGDDDG  180
PLDGGLLGVA DADAAVGLLG GTAGDDGLGN LGLGLGAGDG EVDVESMLVD APPGVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951737.16e-70hypothetical protein VOLCADRAFT_105243
TrEMBLA0A150GXQ41e-158A0A150GXQ4_GONPE; Uncharacterized protein
STRINGXP_002951737.12e-69(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34531313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-21nuclear factor Y, subunit B11