PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ55393.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 224aa    MW: 23186.1 Da    PI: 9.0053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ55393.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-113559226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                kt+lC  f+  G+C+yGd+C+FaHg
  KXZ55393.1 35 KTRLCEKFMSQGHCPYGDKCTFAHG 59
                9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.7E-83360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.8213361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-103464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-163565IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-93559IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MFPNPFFAAM GGPFGPGQGQ GQDGGRGNKG AGARKTRLCE KFMSQGHCPY GDKCTFAHGH  60
EELRSATPRD GPSQGMDGPM HMQLQQQQPP SLPGPAPPSE PFPGSAPAAA AAAAGPRQGA  120
LPGPPPAHPP GAASSPSPPP PAAPKAQEVT FVDKVRSLCG VLGIGNAAAL AAGKPLALQT  180
AAMSLRNGNA LRENPFADSV ERYLQQNQAQ QHHQVQQQQQ HMLH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150H0691e-156A0A150H069_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1126533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-08C3H family protein