PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ56536.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB_related
Protein Properties Length: 795aa    MW: 80936.8 Da    PI: 5.861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ56536.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.7e-11120162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+ ++++a +++G + Wk+ a+++g +R  k + s+ qk+
       KXZ56536.1 120 PWTDEEESQFLKALELHGRD-WKRAAEMIG-TRDNKAVSSHAQKH 162
                      8*****************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.52113167IPR017930Myb domain
SuperFamilySSF466895.68E-10116166IPR009057Homeodomain-like
SMARTSM007172.0E-8117165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-6118158IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-9119165IPR006447Myb domain, plants
CDDcd001675.56E-7120163No hitNo description
PfamPF002493.5E-9120162IPR001005SANT/Myb domain
SuperFamilySSF1027129.15E-18450558No hitNo description
SMARTSM002320.0062451588IPR000555JAB1/MPN/MOV34 metalloenzyme domain
PfamPF144642.8E-10469552IPR028090JAB domain, prokaryotic
Gene3DG3DSA:3.40.140.102.8E-16471577No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MATSANDEAI ARVLGDYYGA DQDYGADAAF IDDSEDSDYG GGPRAKRGRG GRGRGRGRGR  60
GKPPVAPRVD PGSGSGAVSD AEGAAGGGAD SDGDGEEGGR TESGRRRRKD VGKQRAAGRP  120
WTDEEESQFL KALELHGRDW KRAAEMIGTR DNKAVSSHAQ KHFIRLCLDG KPLPPGVVRT  180
GLGYTLSGAL LDPYSSAARS YGFRPELLTR LGPEELKQAL SGLNLDLLPV MYGGRLPDDQ  240
APVLPRRRSS SAGAAGEEQR GRGRGRGAGG GRKRQRNTSG GGAANSEEDG DDDSELGALP  300
EAAAAAGSAS QAAAMAMAAA VAAATAAAGI AVPGLSTAQL MAAAAAQAAA TALGKSDAAP  360
PGQVTAAPSA PPSKAADGGG GSTAAAATSP VAAETTAPPP PATATAAPPS QTEYARNRPR  420
RENAGQRAHM GGTSESLMLV KPVDYLQQPY TVELHAWSMM AMDFHAHLSS YEVIGMLGGS  480
WDPERRHLVV AEAYPCRRAE GSDAATSVEL DPADQVAANA AMEERGQKCV GWYHSHPVFE  540
PSPSQKDMDN QRNYQALFRC SSSRLEPFLG FIVGPYDVSL PAPVSVITCF VVQKLKGNLA  600
PYAVRCQLVG NSQVPDQALL AKLAALVDTT RTDPARVDLA GVWRSYGHLL ADGSTDRTPL  660
TRLAKLRTSL QAHVRAADPQ AVRTALDGLC TQLASSWGFD LAAALPPPAA GGPADAGQEG  720
GAMAADGGAA AAGAAGELST GAAADGGDAE LLGDATAVVK AGALVSVGKG KVDVEAGRGE  780
AGGGAAEPVG SGAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15160RGRGRGRGRG
2104109RRRRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946677.11e-131hypothetical protein VOLCADRAFT_116093
TrEMBLA0A150H2Y60.0A0A150H2Y6_GONPE; Uncharacterized protein
STRINGXP_002946677.11e-130(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.18e-10MYB_related family protein