PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

KXZ57088.1

Common Name

MID

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

Protein Properties

Length: 164aa MW: 18478.5 Da PI: 9.3079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ57088.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1.1e-26	109	159	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d+s+yF+lpik+A+k+Lg+++T+LKriCRq+GI+RWP+Rk++sl KXZ57088.1 109 KADLTSADISSYFHLPIKEASKCLGISTTYLKRICRQLGIPRWPYRKVASL 159 6899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.485	90	164	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-23	112	159	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MTISVLRRDA TCNGCSVYKT YVFNNPRVGR LTLDLHQNGN NFHAHILGSG SDVPLFEICC 60 ELKNGRSTEW LKDCMDAFLK QIICEGYRLE KGKEKPPSAV PLAKVLARKA DLTSADISSY 120 FHLPIKEASK CLGISTTYLK RICRQLGIPR WPYRKVASLD LSDR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB353340	1e-100	AB353340.1 Gonium pectorale MID gene for minus dominance protein, complete cds.
GenBank	LC062718	1e-100	LC062718.1 Gonium pectorale DNA, mating type locus, mating_type: minus.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9ZPM3	1e-119	A9ZPM3_GONPE; MID minus dominance-like protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-13	RWP-RK domain-containing protein

Publications ? help Back to Top
Hamaji T, et al. Identification of the minus-dominance gene ortholog in the mating-type locus of Gonium pectorale. Genetics, 2008. 178(1): p. 283-94 [PMID:18202374] Hamaji T, et al. Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes. G3 (Bethesda), 2016. 6(5): p. 1179-89 [PMID:26921294]