PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZT76802.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 148aa    MW: 17035.6 Da    PI: 10.0865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZT76802.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-2064116456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++++eq   Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  KZT76802.1  64 KRKLSEEQMSMLERSFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 116
                 45899***********************************************9 PP
2HD-ZIP_I/II1171.1e-3763145284
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  +kr+ls+eq+++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k++E++y++Lk+ +da + e++rLe++v
   KZT76802.1  63 RKRKLSEEQMSMLERSFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKMEEEYSKLKSDHDATVMEKCRLETQV 145
                  8******************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.8E-1861122IPR001356Homeobox domain
CDDcd000866.35E-1763119No hitNo description
PROSITE profilePS5007116.7363118IPR001356Homeobox domain
SuperFamilySSF466891.97E-1864128IPR009057Homeodomain-like
PfamPF000461.0E-1764116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-2065125IPR009057Homeodomain-like
PRINTSPR000315.4E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000315.4E-698114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MNPPQLDDPL VLISQYYPSE TYGQFVPLKA AVYPGGAASC TKPRRRRKKN KGDEGGGSGV  60
LMRKRKLSEE QMSMLERSFG SEHKLESERK DRLAAELGLD PRQVAVWFQN RRARWKSKKM  120
EEEYSKLKSD HDATVMEKCR LETQVCIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14665RKKNKGDEGGGSGVLMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZT76802.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.22e-62homeobox-leucine zipper protein ATHB-40
SwissprotO232085e-52ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2Z6ZU941e-106A0A2Z6ZU94_9LAMI; Hd-zip protein athb-40
STRINGXP_010437310.15e-53(Camelina sativa)
STRINGXP_010446748.15e-53(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-54homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]