PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV13832.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 163aa    MW: 18685.4 Da    PI: 4.3276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV13832.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12849346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rW++++ el++++v+q+G++  ++I + ++ gRt+ q+k+++ k
       KZV13832.1  8 RWSKQDTELFYEGVRQFGTD-LSLIQQLFP-GRTRRQVKLKYKK 49
                     8*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.701155IPR017884SANT domain
PfamPF159639.2E-27381No hitNo description
SMARTSM007171.6E-8553IPR001005SANT/Myb domain
CDDcd001673.95E-8849No hitNo description
SuperFamilySSF466892.92E-11855IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-7849IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDKTPIARWS KQDTELFYEG VRQFGTDLSL IQQLFPGRTR RQVKLKYKKE EREQPLRLSD  60
ALTNRAKDHS HFEAVIVRLQ QIAAEENENA DKDGSIELGD NDVTDVGIPN VSDVNDEEAK  120
NEQVEGHEKE EDVGQVLAED GSPLKSYDSD DDLFRWSQYK SDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV13832.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076930.15e-62transcription factor TFIIIB component B''-like
TrEMBLA0A2Z7A4W11e-116A0A2Z7A4W1_9LAMI; Transcription factor TFIIIB component B''-like
STRINGXP_009761824.12e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-32MYB_related family protein