PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV13941.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27202.5 Da    PI: 6.2953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV13941.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.71.7e-121091412456
                 S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 y + +++  LA++l+L  rqV vWFqNrRa+ k
  KZV13941.1 109 YSNIKQKLALANQLNLRPRQVEVWFQNRRARTK 141
                 567789999**********************98 PP
2HD-ZIP_I/II93.32.7e-301091762391
  HD-ZIP_I/II  23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    + ++K +la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lkr++++l+een+rL+ke ++Lr +l
   KZV13941.1 109 YSNIKQKLALANQLNLRPRQVEVWFQNRRARTKLKQNEVDCEYLKRCCETLSEENTRLHKELQDLR-AL 176
                  55789************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.9E-487147IPR001356Homeobox domain
SuperFamilySSF466898.55E-11108152IPR009057Homeodomain-like
PROSITE profilePS5007112.471108143IPR001356Homeobox domain
CDDcd000861.50E-7109144No hitNo description
Gene3DG3DSA:1.10.10.601.4E-11109141IPR009057Homeodomain-like
PfamPF000465.8E-10109141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
SMARTSM003408.3E-20143188IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-8143177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MELGLRLGDA SEPVMFLREN RSQETERFTK IRKSSGSNLG MDLSLNQEME KTREENGEKE  60
DDHISEGVAS DGYQGETLLQ LNLLPFSPVP RQISSHVESL PWSSDNGEYS NIKQKLALAN  120
QLNLRPRQVE VWFQNRRART KLKQNEVDCE YLKRCCETLS EENTRLHKEL QDLRALKTPN  180
SNPFYMATTL TMCPSCERQR LAAAPESGKL TNIDSTPNPN PTPFPLSTPR FYPWRNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV13941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849795.11e-52PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBLA0A2Z6ZXZ91e-175A0A2Z6ZXZ9_9LAMI; Uncharacterized protein
STRINGMigut.B01361.1.p4e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-45homeobox from Arabidopsis thaliana