PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14169.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 342aa    MW: 38640.9 Da    PI: 8.2247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14169.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS191.55.5e-59373001253
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++ ssg+l+ a+a+L ++s las +gd+mqRlaa f+ ALa rl++ +++lyk+l+  +       +   a+++f  ++P++++ + ++N
  KZV14169.1  37 LIQLLLTCANHASSGNLHHADACLRQISRLASINGDSMQRLAARFASALAVRLVKRWPGLYKSLNNGTGL--ALCDIDRAREIFERTFPCMELVYAVTN 133
                 689*************************************************************887776..48888889******************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +++++a++ge+ +H i ++ + +  W+++l+ L + +    +gpp+l+iT +g+    ++e+ e++g  Lak Ae l++pf+f++ v  ++ dl++++L
  KZV14169.1 134 RTLVQAMSGERVIHAIYLGSGSPKLWVPFLRGLQEGSkefdHGPPHLKITCIGK----DREAQERLGAVLAKEAEILHMPFQFDP-VIVDIRDLRIDML 227
                 *********************************9665558899***********....9**************************.6888********* PP

        GRAS 195 rvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                 +++pgEala  ++l+lh ll              +++++ +++ +e+L++vks+sPkvv +veqe++hns+++
  KZV14169.1 228 NLQPGEALALISMLSLHVLLteddrveshfglrkNDQMKDAKRLNEFLEMVKSMSPKVVLLVEQESNHNSNRL 300
                 ********************************99888888889**************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.23211342IPR005202Transcription factor GRAS
PfamPF035141.9E-5637300IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSSWLPPKKP DVNLSLGLPN LHTCSGRLKP EERDVKLIQL LLTCANHASS GNLHHADACL  60
RQISRLASIN GDSMQRLAAR FASALAVRLV KRWPGLYKSL NNGTGLALCD IDRAREIFER  120
TFPCMELVYA VTNRTLVQAM SGERVIHAIY LGSGSPKLWV PFLRGLQEGS KEFDHGPPHL  180
KITCIGKDRE AQERLGAVLA KEAEILHMPF QFDPVIVDIR DLRIDMLNLQ PGEALALISM  240
LSLHVLLTED DRVESHFGLR KNDQMKDAKR LNEFLEMVKS MSPKVVLLVE QESNHNSNRL  300
YGPCWFKVIN VKGCLMICWH DRPIYCVSAW NCFRLPTNNI DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-17273009260Protein SCARECROW
5b3h_A1e-17273008259Protein SCARECROW
5b3h_D1e-17273008259Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554883.11e-130scarecrow-like protein 3
RefseqXP_020554884.11e-130scarecrow-like protein 3
RefseqXP_020554885.11e-130scarecrow-like protein 3
RefseqXP_020554886.11e-130scarecrow-like protein 3
TrEMBLA0A2Z6ZY850.0A0A2Z6ZY85_9LAMI; Scarecrow-like protein 3
STRINGcassava4.1_030344m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-63scarecrow-like 3