PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14225.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 236aa    MW: 26657.7 Da    PI: 6.9615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14225.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31092.3e-3482188199
                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 f+k ltpsdv+k++rlv+pk++ae++        +g+ e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDfvvF+++  +  +
  KZV14225.1  82 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggggDGEGEKGFLLSFEDEAGKPWKFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDFVVFYRHLAEADR 180
                 99******************************9966667999*************************************************87668888 PP

                 .EEEEE-S CS
          B3  92 lvvkvfrk 99 
                 l+++++r+
  KZV14225.1 181 LFIGWRRR 188
                 9****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-4174190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-3178177IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-2880173No hitNo description
PfamPF023624.6E-3182188IPR003340B3 DNA binding domain
PROSITE profilePS5086314.49482189IPR003340B3 DNA binding domain
SMARTSM010191.2E-2682189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSINHYSSDQ IPEPHFYMMD SSSPGQNPIF FSRLMPKIAT TSRPTSDEHM VMSSADDGDS  60
KSSSSLFLDL DQNQRREKEH LFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGGGGDGEGE  120
KGFLLSFEDE AGKPWKFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDFVV FYRHLAEADR  180
LFIGWRRRHS GEEGGGAQAV AGRGMFYNPS QNQMQVQGCS TSPSYQPECV HSGVFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48771883113B3 domain-containing transcription factor NGA1
5os9_B1e-48771883113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600245.13e-67PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
RefseqXP_009600246.13e-67PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
TrEMBLA0A2Z7A5J51e-176A0A2Z7A5J5_9LAMI; Uncharacterized protein
STRINGXP_009600245.11e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.23e-55B3 family protein