PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14292.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 535aa    MW: 59366.2 Da    PI: 5.0749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14292.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.92.2e-901785342374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L++ Ae++++++l+l q +Larl+++ +sp g+p+qR+a+yf+eAL++ l++     ++ + ++++s+++ +++++a+k+f  +sPi  fs +taN
  KZV14292.1 178 VDELIRLAECLETNSLQLGQVILARLNQRmRSPIGKPLQRAAFYFKEALQSLLTG-----SNPI-TRSASSSEIVQTIKAQKVFASISPITMFSSFTAN 270
                 678*************************99*************************.....3333.3444456799************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qa+l+a+eg+ rvH+iDfdi+ G++W++++++La+++    +g p lRi ++ + e   + e + ++e+La+fA el+++fe+++++ +++e l+++++
  KZV14292.1 271 QAVLDALEGSVRVHVIDFDIGLGGHWASFMKELAEKAesrkGGLPILRISALIPDE--YAMESRLIRENLAQFALELNIRFEIEFVLIRTFEYLSFKSI 367
                 **********************************876666589***********55..999999*********************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpreseerikvErell 290
                 ++  gE++aV ++ +++r            + +L+ ++++sP+vvv+v+ e  +  +s+s+ + +++ le+ys+l++sl +a++ +  e ++ +E ++l
  KZV14292.1 368 KFMDGEKVAVIVSPAIFRHA---------GHGFLNDLRRVSPQVVVHVDIEgpMGFGSSSYRQAVVDGLEFYSTLMESLeAANFDSGGEFMQRIETFVL 457
                 *****************997.........357*******************55566***********************888898888*********** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++i + v ++g++       +   re+l +aG+++v ls++a+ qa++llrkv+++g++v +++++++l+W+drpLv++SaWr
  KZV14292.1 458 FPKILEGVQASGRR-------VTPLREALVAAGLRQVGLSQFAEFQAECLLRKVEVRGFHVAKRQAEMLLCWHDRPLVATSAWR 534
                 ************97.......667799********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.052151514IPR005202Transcription factor GRAS
PfamPF035147.5E-88178534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MKVPFTVNDQ NNSKSIERNV NRNPATACSP YEPKSVLELR GSPSPVTDQK PTSNSNTDNI  60
VGSVSGHEAL QLEDQDHVLI NQNLEDWDSL MRELGLHDDS TAPGSKAIII SQSENARVNQ  120
DQYSSLSEFS TVSTFDSTQF VPADFGLLSD VSTYTAASLD QSTGDLNSCN WNVGFDYVDE  180
LIRLAECLET NSLQLGQVIL ARLNQRMRSP IGKPLQRAAF YFKEALQSLL TGSNPITRSA  240
SSSEIVQTIK AQKVFASISP ITMFSSFTAN QAVLDALEGS VRVHVIDFDI GLGGHWASFM  300
KELAEKAESR KGGLPILRIS ALIPDEYAME SRLIRENLAQ FALELNIRFE IEFVLIRTFE  360
YLSFKSIKFM DGEKVAVIVS PAIFRHAGHG FLNDLRRVSP QVVVHVDIEG PMGFGSSSYR  420
QAVVDGLEFY STLMESLEAA NFDSGGEFMQ RIETFVLFPK ILEGVQASGR RVTPLREALV  480
AAGLRQVGLS QFAEFQAECL LRKVEVRGFH VAKRQAEMLL CWHDRPLVAT SAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2418353325378Protein SCARECROW
5b3h_A3e-2418353324377Protein SCARECROW
5b3h_D3e-2418353324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847887.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-141SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2Z7A6350.0A0A2Z7A635_9LAMI; Scarecrow-like protein 15
STRINGMigut.L00296.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-144GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]