PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14342.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 765aa    MW: 83152.4 Da    PI: 5.9894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14342.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.53.9e-1264037592374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeavs+++le+a++lL ++s+la+p g++ qR+aayf eA++arl++s+ ++y+alp+ + s    ++ ++a+++f+ +sP++kfsh+taNq
  KZV14342.1 403 LTLLLQCAEAVSADKLEEANKLLLEISQLATPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPTVPHS----QKMATAFQVFNGISPFVKFSHFTANQ 497
                 579*************************************************************99996....889999******************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s+e+le+tg+rL++fAe+lg+pfef++ +++++ ++++e+L+v+++
  KZV14342.1 498 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SAEALEATGKRLSDFAEKLGLPFEFSP-ITENVGNINPENLNVSSR 591
                 *************************************************....9**************************.799*************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aV++    h+l+d ++s  +    +L++++++sPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer+ vE++ll+rei+nv+
  KZV14342.1 592 EAVAVHWLQ--HSLYDVTGSDVN----TLWFLQRVSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHAVEQQLLSREIKNVL 683
                 ********9..99**99999999....**********************.899********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g +rr + + + +Wre+l+++GFk ++l  +aa+qa lll +++ sdgy++ e++g+l lgWkd  L+++SaWr
  KZV14342.1 684 GVGGPSRRGEAK-FTNWREKLQQSGFKGISLAGNAAAQATLLLGMFPnSDGYTLVEDNGALKLGWKDLCLLTASAWR 759
                 ******887766.***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.297376738IPR005202Transcription factor GRAS
PfamPF035141.4E-123403759IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MAAKAFALGA IEGDNICAPR GGDTDHLSNY STAPLQGCSK MVRKRAASEM ELQQAVNGAR  60
FLRRPAAGTA SPSPPSQGEY GYVTSLPLHN PPAPNYSTVM QPYNATNLNT KAASARSDPS  120
FTFTQNNVCY TAGASSTALT NYMESTAASS SLPSQISYSN TTPSLCVFSG LPLFPPDGSR  180
GANTFQLSSS TSCSSLAAEE TTTWIDGIIK DLIQSSNVSI PQLILNVREI IHPCNPNLAT  240
LLEYRLRSLT SPGNDDVRSS RKLEMLPPPP NFESPSELRL HMQADNSSFL LSQGLNDHMI  300
NHSMSWPPST TQVNIQSNTP RTSTALSFSS SPVTILSNSD EMPEQVQPQD QNLAHQAQRQ  360
LKSPPGDPTT KPARTTNTAI ETMKEKREEY RQKQRDEQGL QLLTLLLQCA EAVSADKLEE  420
ANKLLLEISQ LATPFGTSAQ RVAAYFSEAM SARLVSSCLG IYAALPTVPH SQKMATAFQV  480
FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA SRPGGPPFVR  540
LTGLGNSAEA LEATGKRLSD FAEKLGLPFE FSPITENVGN INPENLNVSS REAVAVHWLQ  600
HSLYDVTGSD VNTLWFLQRV SPKVVTVVEQ DLSHAGSFLG RFVEAIHYYS ALFDSLGACY  660
GEESEERHAV EQQLLSREIK NVLGVGGPSR RGEAKFTNWR EKLQQSGFKG ISLAGNAAAQ  720
ATLLLGMFPN SDGYTLVEDN GALKLGWKDL CLLTASAWRP SLSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03867603380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101980.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2Z7A6810.0A0A2Z7A681_9LAMI; Protein SCARECROW
STRINGMigut.J00002.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein