PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14447.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 161aa    MW: 18483.1 Da    PI: 9.8265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14447.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.42.2e-4351352127
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                 +pGfrF Pt+eelv++yL+ ++e +kle+ ++vi+ v+iy++ePw+Lpk     +++++++w+fF+++++++a+  r+nr+t++gyWkatg+  +v+++
  KZV14447.1   5 APGFRFYPTEEELVSFYLRSQLELEKLETiNRVIPPVQIYQFEPWQLPKqcgeLCQGDTEQWFFFVPKKENEARRGRPNRTTATGYWKATGSPSHVHAA 103
                 69***********************97762556***************646654445777*************************************** PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                 +g+ +g+k+++vfykg+a +g+kt+W m+ey+
  KZV14447.1 104 DGKSIGVKRSMVFYKGKAGSGRKTKWKMNEYT 135
                 *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-423152IPR003441NAC domain
PROSITE profilePS5100542.1564159IPR003441NAC domain
PfamPF023654.5E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEEIAPGFRF YPTEEELVSF YLRSQLELEK LETINRVIPP VQIYQFEPWQ LPKQCGELCQ  60
GDTEQWFFFV PKKENEARRG RPNRTTATGY WKATGSPSHV HAADGKSIGV KRSMVFYKGK  120
AGSGRKTKWK MNEYTAIVQD SNTTVPKVRK FSLGSVYTGA Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-29413415138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851387.14e-76NAC domain-containing protein 90-like
SwissprotQ9FMR31e-63NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2Z6ZYY11e-117A0A2Z6ZYY1_9LAMI; NAC domain-containing protein 90-like
STRINGMigut.N02478.1.p3e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]