PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14565.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27715.9 Da    PI: 9.5221
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14565.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.7e-181050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +i n+s r+ t+ kR++g++KK +ELS+LC+++++ i++s+
  KZV14565.1 10 FITNESSRKATYKKRKKGLMKKVSELSTLCGIDACAIVYSP 50
                89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.82149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23186IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-25160IPR002100Transcription factor, MADS-box
CDDcd002661.70E-22286No hitNo description
PRINTSPR004046.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTRKKVKLSF ITNESSRKAT YKKRKKGLMK KVSELSTLCG IDACAIVYSP YESTPEVWPA  60
DPRDAQRVIA QFRRVPEMEQ SKKMVNQESF IRGRIAKAAE QMKKLQKYNR EKEITHLMYQ  120
CLTGKGLQGL AVPELNDMGW LLDQNLKEIC KRIETLKKEE APPSGRAALE QKPAVEESGG  180
MERAPLQQMW FSDWMGNPSY QQQQQQMGGL LGYGCGGGAS GGDGMILPFN DGGNHNTAAI  240
WCNGFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLSFITNESSRKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088101.11e-106agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2Z7A6G30.0A0A2Z7A6G3_9LAMI; Uncharacterized protein
STRINGMigut.B00884.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-56AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]