PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV14590.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LSD

Protein Properties

Length: 243aa MW: 25932.9 Da PI: 8.5909

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV14590.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.3	5.9e-14	75	99	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+CalC+++ KZV14590.1 75 CSGCRSLLMYPSGATNVCCALCNAI 99 ***********************97 PP
2	zf-LSD1	49	9.6e-16	114	138	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV KZV14590.1 114 CGGCRTLLMYTRGATSVRCSCCHTV 138 ************************9 PP
3	zf-LSD1	50.6	3e-16	151	175	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V KZV14590.1 151 CGNCRTTLMYPYGAPSVKCAVCQFV 175 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.1E-14	72	102	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.1E-12	75	99	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.0E-17	111	140	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.2E-13	114	138	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.3E-14	148	178	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-14	151	175	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000303	Biological Process	response to superoxide
GO:0001666	Biological Process	response to hypoxia
GO:0002240	Biological Process	response to molecule of oomycetes origin
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	Biological Process	regulation of ethylene-activated signaling pathway
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010602	Biological Process	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	Biological Process	aerenchyma formation
GO:0043069	Biological Process	negative regulation of programmed cell death

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MKMKSRETMA ECDEWFGSVV IELNAIGKEY PLRGGLESRI KAKNRSRVDK SNEQSYSKLD 60 NDISASGGMQ SQIVCSGCRS LLMYPSGATN VCCALCNAIT NVPPPGMEMA QLICGGCRTL 120 LMYTRGATSV RCSCCHTVNL APASNVAHVN CGNCRTTLMY PYGAPSVKCA VCQFVTHVNM 180 VNVRVPIPMH RPNGTPSTAS PPSSSAALSN SQNQTVVVEN PMSVDKSGKL VSNVVVGVTT 240 DKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV14590.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069944.1	1e-111	protein LSD1
Swissprot	Q6ASS2	1e-75	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A2Z7A6Q5	1e-178	A0A2Z7A6Q5_9LAMI; Vacuolar protein sorting-associated protein 22
STRING	XP_008225697.1	1e-100	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	4e-73	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]