PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14613.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family G2-like
Protein Properties Length: 482aa    MW: 54485 Da    PI: 4.8056
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14613.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.13.9e-28228282155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+rl+Wt+eLH+ F +av+++GG+++AtPk il++m v+gLt+ hvkSHLQkYR+
  KZV14613.1 228 KERLKWTKELHDMFEKAVNRIGGPDRATPKGILRAMAVPGLTIFHVKSHLQKYRM 282
                 68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121655.2E-6410135IPR021998Alfin
Gene3DG3DSA:3.30.40.104.7E-4182212IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:1.10.10.602.6E-27225283IPR009057Homeodomain-like
SuperFamilySSF466891.88E-16227282IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23228282IPR006447Myb domain, plants
PfamPF002491.9E-6230281IPR001005SANT/Myb domain
PfamPF143797.5E-11315357IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASVSSAART VEEIFKDYSA RRAGILRALI YDVDEFYGIC DPEKENLCLY GHPNETWEVN  60
LPAEEVPPEL PEPALGINFA RDGMNRRDWL SLIAVHSDCW LLSVAFYLGA RLNRNERKRL  120
FSLINDLPTV FEVVTERKPV KDKPNADSGS RSRGSTKRSN DGQAKSNPKL AEESYEEEDE  180
DDEHSETLCG SCGGNYNADE FWIGCDICMV TRPSHCDMGS NRSNNSAKER LKWTKELHDM  240
FEKAVNRIGG PDRATPKGIL RAMAVPGLTI FHVKSHLQKY RMSVFTREED HIRGKSERRS  300
ISEMLPNFAV TSGAQLTEVL QIQKEAQRRL SCQNEVQKSL TLKFDAQGRF LDGIMEEFKN  360
RNPTTKPIEP YSPISSLPSL SEESDQSNAK EFESNSEEVD PETADISSTD EFRARKRIKI  420
QDQAMPEALA ASTFNPEPQN LNIFSLNGFE EIVFTDQDIG YPWCVGALQS PLPQAFYYPV  480
NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvl_A2e-6091404135PHD finger protein ALFIN-LIKE 2
5xvw_A2e-6091404135PHD finger protein ALFIN-LIKE 2
5xvw_B2e-6091404135PHD finger protein ALFIN-LIKE 2
5xvw_C2e-6091404135PHD finger protein ALFIN-LIKE 2
5xvw_E2e-6091404135PHD finger protein ALFIN-LIKE 2
5y21_A2e-6091404135PHD finger protein ALFIN-LIKE 2
5y21_B2e-6091404135PHD finger protein ALFIN-LIKE 2
5y53_A2e-6091404135PHD finger protein ALFIN-LIKE 2
5y53_B2e-6091404135PHD finger protein ALFIN-LIKE 2
5y53_C2e-6091404135PHD finger protein ALFIN-LIKE 2
5y53_E2e-6091404135PHD finger protein ALFIN-LIKE 2
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077547.11e-131myb family transcription factor PHL7
RefseqXP_011077550.11e-131myb family transcription factor PHL7
RefseqXP_020549678.11e-131myb family transcription factor PHL7
TrEMBLA0A2Z7A0H10.0A0A2Z7A0H1_9LAMI; PHD finger protein ALFIN-LIKE 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-42G2-like family protein