PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14959.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21918.4 Da    PI: 9.9626
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14959.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.7e-141150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i+n+  r+ +f kR++g++KK +E+ +LC++e++ +i+s+
  KZV14959.1 11 IDNDAERKASFKKRKKGLIKKLSEIKILCGVEACAVIYSP 50
                9*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.484149IPR002100Transcription factor, MADS-box
CDDcd002664.70E-16284No hitNo description
PRINTSPR004047.2E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-22393IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MARKKVTLAY IDNDAERKAS FKKRKKGLIK KLSEIKILCG VEACAVIYSP FEPPTVWPSR  60
EVAYTLIQRF KQLPEIEKTK KMVNQESFIQ HQLKRTQERL RRLQKENRRK EMQHFMYMVV  120
EGKANIKDFD YRDSREMAYM IHETLEEISA RMKALEEAGA TGTVPPVTTP DGGEVPLENS  180
PATTPGSSAT P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAYIDNDAERKASFKKRK
21631RKASFKKRKKGLIKKL
32125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.12e-52agamous-like MADS-box protein AGL80
TrEMBLA0A2Z7A0L21e-140A0A2Z7A0L2_9LAMI; Uncharacterized protein
STRINGMigut.B01455.1.p2e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-37AGAMOUS-like 80