PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15099.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 683aa    MW: 73671.3 Da    PI: 6.4698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15099.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.1e-16429475455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  KZV15099.1 429 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 475
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.08E-17421479No hitNo description
SuperFamilySSF474591.96E-20422485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13429475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-20429483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MARGKLESGQ LKTSPTDNSS RMDGDFVELV WENGQPMMQG QSSRAARSLA SHSLQSNPPK  60
IRDAGVGHPT ISRIGKFGEV ETSLNDISVV VPTGELDLSQ DDEIDPWLNF PFDDALPHDY  120
CSEVFPETSG VTSSMHHISV PVDKSNSYDH TGRNLRNDGV GLKGLSCKAH ILSPWPPLQG  180
QTSDFSLGSQ FSDVISNSTS IYPDSVFGHS AQDRDLANDS ASKKVEWPSL KLPNNNLLNF  240
SHFSRSASLV KAKSPVHDGI PTTVSLGTEK VGGKDNVMVS SGPNLVKSAP DEPPSSSHKG  300
INLRVQPTVC EMGNSRPYMV EATKDLPAEN SVVSFVKNDN SITPSNCSSL KGVQDNDKNI  360
EPMVTSSSVG SDNCTDTVSC EKRPNYKRKL LDMEESECRS DGIQTGSVGV KKATSPGVSG  420
SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKADK ASMLDEAIEY LKTLQLQVQI  480
MSMGAGLCMP PLMFPPGIQQ MHPTHVPHFS PMGMSMGMGF GTSMVDMNGG GTPRCPIFPL  540
PPMQAAQFSH PMSGPFNFPR VPGHSFPVYG YPSQGLHNSA PSVPLVALNR PPTDSAMGTG  600
KHNEVQSSSP NLNSEDPLTH NNSQRISNAE ASSSRNHGSN QLRTTTKVLD KPSIGQDNVQ  660
ATDVNFTESA SAAIDYTKEA GCD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433438ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087568.10.0transcription factor PIF3 isoform X3
TrEMBLA0A2Z7A1150.0A0A2Z7A115_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-45phytochrome interacting factor 3