PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV15130.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 22910.2 Da PI: 9.3498

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV15130.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.7	9.8e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvt++kR+ gi KKA+EL vLCd++vav++fs+tg+l +++s KZV15130.1 10 RIENATTRQVTYAKRKDGIVKKASELAVLCDTDVAVVMFSPTGRLTTFAS 59 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.151	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-33	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.26E-26	2	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-22	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGRKKLAMRR IENATTRQVT YAKRKDGIVK KASELAVLCD TDVAVVMFSP TGRLTTFASN 60 GRVEDIFLRF VDRPDELRGG PIANEEFLSE RLKQLKYEGE MLEKIATYYE PSVEKINTVL 120 EAGVYQQFLT SAIQRVQLSK LQAAIVPMDD TTTSVAHHTV NQSRMSPGKD DDEGGTMGPH 180 LSLSFLEAKK RWEKIRNVTV NPTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-15	1	78	1	79	MEF2C
5f28_B	5e-15	1	78	1	79	MEF2C
5f28_C	5e-15	1	78	1	79	MEF2C
5f28_D	5e-15	1	78	1	79	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV15130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549788.1	1e-89	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	3e-28	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A2Z7A856	1e-150	A0A2Z7A856_9LAMI; AGAMOUS-like 66 isoform 1
STRING	Migut.H01211.1.p	5e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5292	18	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	1e-30	AGAMOUS-like 67

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]