PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15369.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 179aa    MW: 20771.7 Da    PI: 9.8224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15369.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.25.9e-32100158159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  KZV15369.1 100 LDDGYKWRKYGQKSVKDSLHPRSYYRCTHHTCNVKKQIQRLSKDNSIVVTTYEGIHNHP 158
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-3288158IPR003657WRKY domain
SuperFamilySSF1182905.36E-2892159IPR003657WRKY domain
PROSITE profilePS5081128.13995160IPR003657WRKY domain
SMARTSM007743.0E-36100159IPR003657WRKY domain
PfamPF031062.0E-25101158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEGESNSYFP PSLFPMQEQM NINPSSMLDQ SMQNHPDQFL PLPSQNQNID GFGQILLPVQ  60
NPVSQDGIVR RNIGKCGKKR RNKNVPARIA FHTRSSEDIL DDGYKWRKYG QKSVKDSLHP  120
RSYYRCTHHT CNVKKQIQRL SKDNSIVVTT YEGIHNHPCE KLMETLTPIL RQLQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-2487157171WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKRRNK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081140.11e-64probable WRKY transcription factor 43
SwissprotQ9FFS31e-56WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2Z7A1R91e-132A0A2Z7A1R9_9LAMI; Putative WRKY transcription factor 56-like
STRINGMigut.A00716.1.p2e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.15e-59WRKY DNA-binding protein 24