PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15896.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 238aa    MW: 27033.4 Da    PI: 6.5233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15896.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34261162101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++e+isw+++g++f+v+++ efa+++Lp+ Fkhsnf+SF+RQLn+YgF+kv +++         weF+++ F+kg++++l++i+
    KZV15896.1  26 FLVKTYMVVEDPATDEVISWNADGTAFIVWQTAEFARDLLPTLFKHSNFSSFIRQLNTYGFRKVATSR---------WEFSNEMFRKGERDQLCEIR 113
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    KZV15896.1 114 RRR 116
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3522115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-3123115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTEACDNPSD EKGLVEYVPK ASASPFLVKT YMVVEDPATD EVISWNADGT AFIVWQTAEF  60
ARDLLPTLFK HSNFSSFIRQ LNTYGFRKVA TSRWEFSNEM FRKGERDQLC EIRRRRAWSN  120
KPLHNVQHQT APPKPLTDNI SQHQSDEDQR SSSTSSSSDY SSLICENKRL RRENGALNLE  180
LEIAKRKCKQ LLGLAAVCEG INGEKEEEEN GDQGPMLFGV RLMEVQSGVA KKRKVEVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-21231151104Putative transcription factor
5d5x_B2e-21231151104Putative transcription factor
5d5x_E2e-21231151104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888274.13e-95heat stress transcription factor B-3-like
SwissprotO222306e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2Z7A3321e-178A0A2Z7A332_9LAMI; Heat stress transcription factor B-3
STRINGXP_008244246.15e-89(Prunus mume)
STRINGXP_009617028.16e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-59heat shock transcription factor B3