PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15986.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17682.2 Da    PI: 10.55
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15986.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.5e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  KZV15986.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
                79***********************************************86 PP
2K-box56.21.5e-19631253799
       K-box  37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 h++GedL+sL lkeLq+Le+qL++slk+iR++K++ l eq + l k+ ke ++e    r+++e
  KZV15986.1  63 HYMGEDLDSLRLKELQSLEHQLDTSLKHIRTRKDKALQEQNNLLAKRLKEKEKESSVTRNQWE 125
                 9*********************************************99999999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002651.91E-35261No hitNo description
SuperFamilySSF554552.75E-29278IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.62940130IPR002487Transcription factor, K-box
PfamPF014861.5E-1463119IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SWHYMGEDLD SLRLKELQSL EHQLDTSLKH IRTRKDKALQ EQNNLLAKRL KEKEKESSVT  120
RNQWEQVQSH ELNSPSFGLR QPLSSLNIRN VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20175168MEF2C
5f28_B3e-20175168MEF2C
5f28_C3e-20175168MEF2C
5f28_D3e-20175168MEF2C
6bz1_A4e-20175168MEF2 CHIMERA
6bz1_B4e-20175168MEF2 CHIMERA
6bz1_C4e-20175168MEF2 CHIMERA
6bz1_D4e-20175168MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773500.13e-73agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotQ424292e-62AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2Z7A3D01e-106A0A2Z7A3D0_9LAMI; Transcription factor
STRINGXP_009792071.14e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-50AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]