PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16000.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 546aa    MW: 60240.8 Da    PI: 7.4735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16000.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.26e-18260309255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++f++Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  KZV16000.1 260 RSKHSATEQRRRSKINDRFQNLRDIVPNS----DQKRDKASFLLEVIEYIQFLQ 309
                 889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-24255329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19256324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.206258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-15260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-14260312No hitNo description
SMARTSM003532.2E-13264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.048471546IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MELPRPRGYE TEGRKATHDF LSLYSSSSPV QQDPTPQQGG YLETHDFLRP LERVGKNGTR  60
DESKDEMSVV DKLPLPAAEH LLPGGIGTYS ISYFNQRGLK PEGEGSLFMM QASSATRNDE  120
NSNSSSHTGS GFTLCDESAV KKGKTGKENF SAQRHVLQEA GLNMVGGQWP PASERASQSS  180
SNNKNNTATL GSFSSSQPAS SQKNHSFMSM IKSAKNDEEE CDDDDDKEFI MRKAPSFQPK  240
GNLSVKTETK TIDQKPNTPR SKHSATEQRR RSKINDRFQN LRDIVPNSDQ KRDKASFLLE  300
VIEYIQFLQE KVNKYESSYN VWNHETSKIV QRRNCHMGEG VIDHSQVFGS GPASALAARF  360
EENKIRVSPA MPINGQNLVE SDTSTATTFK EKAQQPELTS KAATLHLPMQ PGIFNLGRPS  420
AVASPLSPHQ ASDITKTTSW IPSHVLQSRS STDYWTRDKL KDHNLAIESG TISISSAYSQ  480
RLLSTLTLAL QESGIDLSQA SISVQIDLGK RSNGASSSTS TVKEDVPRDA SMEDEFSQAL  540
KRLKTI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078682.10.0transcription factor BIM1 isoform X1
TrEMBLA0A2Z7AAL30.0A0A2Z7AAL3_9LAMI; Uncharacterized protein
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-95bHLH family protein