PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV16017.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

CO-like

Protein Properties

Length: 903aa MW: 98503.5 Da PI: 5.583

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV16017.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.6	1.3e-08	526	569	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC+ C + H+ H++v KZV16017.1 526 ARACESCLRKRARWFCAADDAFLCQACDASVHSAnqlasrHERV 569 578*****************************667888888876 PP
2	CCT	64	4.4e-22	844	887	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirY++RK +Ae+RpR+KGrFvk+a KZV16017.1 844 REARVSRYREKRRTRLFAKKIRYQVRKINAEKRPRMKGRFVKRA 887 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.560.10	2.0E-47	28	167	IPR027413	GroEL-like equatorial domain
SuperFamily	SSF48592	8.34E-50	35	168	No hit	No description
CDD	cd03344	0	37	517	No hit	No description
Pfam	PF00118	3.9E-74	56	501	IPR002423	Chaperonin Cpn60/TCP-1 family
PRINTS	PR00298	2.2E-44	60	86	IPR001844	Chaperonin Cpn60
PRINTS	PR00298	2.2E-44	115	142	IPR001844	Chaperonin Cpn60
SuperFamily	SSF54849	2.72E-11	173	225	No hit	No description
Gene3D	G3DSA:3.50.7.10	4.0E-70	202	402	IPR027409	GroEL-like apical domain
SuperFamily	SSF52029	2.09E-63	212	403	IPR027409	GroEL-like apical domain
PRINTS	PR00298	2.2E-44	295	318	IPR001844	Chaperonin Cpn60
PRINTS	PR00298	2.2E-44	377	402	IPR001844	Chaperonin Cpn60
Gene3D	G3DSA:1.10.560.10	2.0E-47	403	427	IPR027413	GroEL-like equatorial domain
PRINTS	PR00298	2.2E-44	425	446	IPR001844	Chaperonin Cpn60
SuperFamily	SSF48592	8.34E-50	435	505	No hit	No description
Gene3D	G3DSA:1.10.560.10	2.0E-47	462	502	IPR027413	GroEL-like equatorial domain
PROSITE profile	PS50119	11.078	524	571	IPR000315	B-box-type zinc finger
SMART	SM00336	4.3E-11	524	571	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.4E-7	526	569	IPR000315	B-box-type zinc finger
CDD	cd00021	5.66E-11	527	571	No hit	No description
Pfam	PF06203	8.0E-17	844	886	IPR010402	CCT domain
PROSITE profile	PS51017	15.904	844	886	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042026	Biological Process	protein refolding
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MCVCEIYSET NGKSNTRWLW SRRNVKQKCL VVKAGPKRVA FDRKCRDSLL SGINKLADAV 60 SVTLGPKGRN VVLSESGTLK VINDGVTIAK AIELSDPIEN IGALLLQEVA IKTNGSSGDG 120 TTTSIILARE MFRSGLLAIT SGANPVALRK GMEKTVKELV KSLKENSYAV TRTVASISAG 180 NDEFIGKLIA EAMDKIGPDG LISVESSSSS DTSVIVEEGM KIDKGYMSPH FITNKDKSLV 240 EFDNAKILVT DLKISNVREI VPLLEKATQL SVPLLIIAED ISRQVLEILV VNKMQGVLNA 300 AAVKCPGFGE AKKAILQDIA LMTGADFICG DLGLTLESTT SDQLGVAQKV TITSNCTTII 360 ADPSTKAEIQ ARVLQIKKDL AETDSKYLAE KLSARIAKLC GGVAIIKVGA HTEMELEDRK 420 LRIEDARSAT FAAMAEGVVP GGGAIYVHLS RKIPMLKKVF QDPDEKIGAD IVGTALLAPA 480 KLIAANAGVD GAVVVEKILS SDTRVGRAMS YVDELKAANA IGGKTARACE SCLRKRARWF 540 CAADDAFLCQ ACDASVHSAN QLASRHERVR LETSSFKGDH VINSCPPPAW HQGFTRKART 600 PRHTKSKQPH LMPNNPLPLV PEMNGEDPFT EENEEQLLCR VPVFDPFYDE FCTEETRNIN 660 GSTEVADYDQ CDLNLAELLN CDIELEEFAA NVESLLGEGT EEDSASGNND LDSKTVKAED 720 EDIDEETQAV IACHFDPALD MEMNWDFDYA SSSIAGEHGQ GMKNEASIES MDENIESGTH 780 VKKMMLLSLN YESVMADWGT QGSPIWTTGV RPDELNLDGI MITSLDGDLY GGRWGSSAHE 840 IAEREARVSR YREKRRTRLF AKKIRYQVRK INAEKRPRMK GRFVKRASFL GSSFPAVPPY 900 LKK

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MCVCEIYSET NGKSNTRWLW SRRNVKQKCL VVKAGPKRVA FDRKCRDSLL SGINKLADAV  60
SVTLGPKGRN VVLSESGTLK VINDGVTIAK AIELSDPIEN IGALLLQEVA IKTNGSSGDG  120
TTTSIILARE MFRSGLLAIT SGANPVALRK GMEKTVKELV KSLKENSYAV TRTVASISAG  180
NDEFIGKLIA EAMDKIGPDG LISVESSSSS DTSVIVEEGM KIDKGYMSPH FITNKDKSLV  240
EFDNAKILVT DLKISNVREI VPLLEKATQL SVPLLIIAED ISRQVLEILV VNKMQGVLNA  300
AAVKCPGFGE AKKAILQDIA LMTGADFICG DLGLTLESTT SDQLGVAQKV TITSNCTTII  360
ADPSTKAEIQ ARVLQIKKDL AETDSKYLAE KLSARIAKLC GGVAIIKVGA HTEMELEDRK  420
LRIEDARSAT FAAMAEGVVP GGGAIYVHLS RKIPMLKKVF QDPDEKIGAD IVGTALLAPA  480
KLIAANAGVD GAVVVEKILS SDTRVGRAMS YVDELKAANA IGGKTARACE SCLRKRARWF  540
CAADDAFLCQ ACDASVHSAN QLASRHERVR LETSSFKGDH VINSCPPPAW HQGFTRKART  600
PRHTKSKQPH LMPNNPLPLV PEMNGEDPFT EENEEQLLCR VPVFDPFYDE FCTEETRNIN  660
GSTEVADYDQ CDLNLAELLN CDIELEEFAA NVESLLGEGT EEDSASGNND LDSKTVKAED  720
EDIDEETQAV IACHFDPALD MEMNWDFDYA SSSIAGEHGQ GMKNEASIES MDENIESGTH  780
VKKMMLLSLN YESVMADWGT QGSPIWTTGV RPDELNLDGI MITSLDGDLY GGRWGSSAHE  840
IAEREARVSR YREKRRTRLF AKKIRYQVRK INAEKRPRMK GRFVKRASFL GSSFPAVPPY  900
LKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1iok_A	1e-137	37	506	4	478	CHAPERONIN 60
1iok_B	1e-137	37	506	4	478	CHAPERONIN 60
1iok_C	1e-137	37	506	4	478	CHAPERONIN 60
1iok_D	1e-137	37	506	4	478	CHAPERONIN 60
1iok_E	1e-137	37	506	4	478	CHAPERONIN 60
1iok_F	1e-137	37	506	4	478	CHAPERONIN 60
1iok_G	1e-137	37	506	4	478	CHAPERONIN 60
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in protein assisted folding. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV16017.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096811.1	0.0	chaperonin 60 subunit alpha 2, chloroplastic
Swissprot	Q56XV8	0.0	CPNA2_ARATH; Chaperonin 60 subunit alpha 2, chloroplastic
TrEMBL	A0A2Z7A3G6	0.0	A0A2Z7A3G6_9LAMI; Chaperonin 60 subunit alpha 2, chloroplastic-like
STRING	Migut.M01985.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	5e-80	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Hill JE,Hemmingsen SM Arabidopsis thaliana type I and II chaperonins. Cell Stress Chaperones, 2001. 6(3): p. 190-200 [PMID:11599560] Nakanishi H, et al. Characterization of the Arabidopsis thaliana mutant pcb2 which accumulates divinyl chlorophylls. Plant Cell Physiol., 2005. 46(3): p. 467-73 [PMID:15695432] Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Peng L, et al. A chaperonin subunit with unique structures is essential for folding of a specific substrate. PLoS Biol., 2011. 9(4): p. e1001040 [PMID:21483722] Ke X, et al. Functional divergence of chloroplast Cpn60α subunits during Arabidopsis embryo development. PLoS Genet., 2017. 13(9): p. e1007036 [PMID:28961247]